miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29105 3' -54.4 NC_006146.1 + 23419 0.65 0.970734
Target:  5'- aCCUGCCGGAGGGgcaguacCACaag-CUCCGGCu -3'
miRNA:   3'- -GGGUGGUCUCCU-------GUGcacaGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 123651 0.65 0.970447
Target:  5'- aCCCggGCCAGGGGcCACGUcgacccgcgCCAGCu -3'
miRNA:   3'- -GGG--UGGUCUCCuGUGCAcaga-----GGUUG- -5'
29105 3' -54.4 NC_006146.1 + 102352 0.66 0.968073
Target:  5'- gCUCGCCAGcgguccGGGCACucaaagGUCUCCGGg -3'
miRNA:   3'- -GGGUGGUCu-----CCUGUGca----CAGAGGUUg -5'
29105 3' -54.4 NC_006146.1 + 127489 0.66 0.968073
Target:  5'- -aCGCCAuGcAGcGGCGCGUGUUUCCcaAGCa -3'
miRNA:   3'- ggGUGGU-C-UC-CUGUGCACAGAGG--UUG- -5'
29105 3' -54.4 NC_006146.1 + 75777 0.66 0.964919
Target:  5'- aCCAagcCCAGGGGGCucuacuCGggcGUCUCgGGCg -3'
miRNA:   3'- gGGU---GGUCUCCUGu-----GCa--CAGAGgUUG- -5'
29105 3' -54.4 NC_006146.1 + 111586 0.66 0.963932
Target:  5'- aCCGCCAGccucucggccagccAGGuCAcCGUGUCcaacaccaUCCAGCu -3'
miRNA:   3'- gGGUGGUC--------------UCCuGU-GCACAG--------AGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 92075 0.66 0.961553
Target:  5'- uCCC-CCGGAucacggcugccuGGACGCGUGggcCUCCc-- -3'
miRNA:   3'- -GGGuGGUCU------------CCUGUGCACa--GAGGuug -5'
29105 3' -54.4 NC_006146.1 + 59775 0.66 0.961553
Target:  5'- gCCACCuGGGGGuugaGgGUGUCgacCCGGCa -3'
miRNA:   3'- gGGUGGuCUCCUg---UgCACAGa--GGUUG- -5'
29105 3' -54.4 NC_006146.1 + 3311 0.66 0.957969
Target:  5'- gCCC-CCAGGGGAgGCccgGcCUCCAcACa -3'
miRNA:   3'- -GGGuGGUCUCCUgUGca-CaGAGGU-UG- -5'
29105 3' -54.4 NC_006146.1 + 2379 0.66 0.957969
Target:  5'- gCCC-CCAGGGGAgGCccgGcCUCCAcACa -3'
miRNA:   3'- -GGGuGGUCUCCUgUGca-CaGAGGU-UG- -5'
29105 3' -54.4 NC_006146.1 + 1447 0.66 0.957969
Target:  5'- gCCC-CCAGGGGAgGCccgGcCUCCAcACa -3'
miRNA:   3'- -GGGuGGUCUCCUgUGca-CaGAGGU-UG- -5'
29105 3' -54.4 NC_006146.1 + 516 0.66 0.957969
Target:  5'- gCCC-CCAGGGGAgGCccgGcCUCCAcACa -3'
miRNA:   3'- -GGGuGGUCUCCUgUGca-CaGAGGU-UG- -5'
29105 3' -54.4 NC_006146.1 + 156001 0.66 0.957969
Target:  5'- gCCACCuccGGGGGCACG-GUCgagaaGACg -3'
miRNA:   3'- gGGUGGu--CUCCUGUGCaCAGagg--UUG- -5'
29105 3' -54.4 NC_006146.1 + 85248 0.66 0.957969
Target:  5'- aUCCACCAGGGucCcCGUGgg-CCAACc -3'
miRNA:   3'- -GGGUGGUCUCcuGuGCACagaGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 151598 0.66 0.954163
Target:  5'- gCCCAUgaUGGAGcGGCGCGUGacccgCUCCAc- -3'
miRNA:   3'- -GGGUG--GUCUC-CUGUGCACa----GAGGUug -5'
29105 3' -54.4 NC_006146.1 + 103398 0.67 0.950131
Target:  5'- gCCUGCCAGuggGGGGCGuCGUG-CUCCc-- -3'
miRNA:   3'- -GGGUGGUC---UCCUGU-GCACaGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 70697 0.67 0.950131
Target:  5'- gCCACgGGccGcCugGUGUCUCUGGCg -3'
miRNA:   3'- gGGUGgUCucCuGugCACAGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 70246 0.67 0.950131
Target:  5'- uCCUACCAGuguaacgcGGACACGUucUCUCCc-- -3'
miRNA:   3'- -GGGUGGUCu-------CCUGUGCAc-AGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 114793 0.67 0.945869
Target:  5'- gCCACCuucgccuucguGGAGGAgCugGUGg--CCGACa -3'
miRNA:   3'- gGGUGG-----------UCUCCU-GugCACagaGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 40775 0.67 0.945869
Target:  5'- uCCCGCCuGAGGGucucCACGcgGUUUCUGAg -3'
miRNA:   3'- -GGGUGGuCUCCU----GUGCa-CAGAGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.