miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29108 3' -63.1 NC_006146.1 + 40258 0.66 0.63269
Target:  5'- cGGGUGGgauccguaguagGGAGG-CGCGGGcggagGCGGg- -3'
miRNA:   3'- -CCCGCCa-----------CCUCUgGCGCCCa----CGCCac -5'
29108 3' -63.1 NC_006146.1 + 92266 0.67 0.615416
Target:  5'- gGGGCGGgcccggccUGGGGcuGCUGCuGGGggGCGGg- -3'
miRNA:   3'- -CCCGCC--------ACCUC--UGGCG-CCCa-CGCCac -5'
29108 3' -63.1 NC_006146.1 + 92206 0.67 0.615416
Target:  5'- gGGGCGGgcccggccUGGGGcuGCUGCuGGGggGCGGg- -3'
miRNA:   3'- -CCCGCC--------ACCUC--UGGCG-CCCa-CGCCac -5'
29108 3' -63.1 NC_006146.1 + 92146 0.67 0.615416
Target:  5'- gGGGCGGgcccggccUGGGGcuGCUGCuGGGggGCGGg- -3'
miRNA:   3'- -CCCGCC--------ACCUC--UGGCG-CCCa-CGCCac -5'
29108 3' -63.1 NC_006146.1 + 137379 0.68 0.539547
Target:  5'- cGGGCacaaccuaGGgagGGAGGCCGggaGGGUGCuGGg- -3'
miRNA:   3'- -CCCG--------CCa--CCUCUGGCg--CCCACG-CCac -5'
29108 3' -63.1 NC_006146.1 + 43591 0.68 0.548893
Target:  5'- gGGaGCGGggcgGGAGGCCGgguCGGGU-CGGg- -3'
miRNA:   3'- -CC-CGCCa---CCUCUGGC---GCCCAcGCCac -5'
29108 3' -63.1 NC_006146.1 + 77832 0.67 0.558288
Target:  5'- cGGCGGaGGGGGggGCGGG-GgGGUGg -3'
miRNA:   3'- cCCGCCaCCUCUggCGCCCaCgCCAC- -5'
29108 3' -63.1 NC_006146.1 + 92087 0.67 0.604874
Target:  5'- gGGGCGGcccggccUGGGGcuGCUGCuGGGggGCGGg- -3'
miRNA:   3'- -CCCGCC-------ACCUC--UGGCG-CCCa-CGCCac -5'
29108 3' -63.1 NC_006146.1 + 92027 0.67 0.615416
Target:  5'- gGGGCGGgcccggccUGGGGcuGCUGCuGGGggGCGGg- -3'
miRNA:   3'- -CCCGCC--------ACCUC--UGGCG-CCCa-CGCCac -5'
29108 3' -63.1 NC_006146.1 + 44951 0.72 0.325309
Target:  5'- gGGGCGcGgGGAGGCCcCGGGggacucgaccGCGGUGg -3'
miRNA:   3'- -CCCGC-CaCCUCUGGcGCCCa---------CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 169754 0.73 0.279495
Target:  5'- gGGGCGGcccGGGGACCcucGCGGGggcaccgGCGcGUGg -3'
miRNA:   3'- -CCCGCCa--CCUCUGG---CGCCCa------CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 168822 0.73 0.279495
Target:  5'- gGGGCGGcccGGGGACCcucGCGGGggcaccgGCGcGUGg -3'
miRNA:   3'- -CCCGCCa--CCUCUGG---CGCCCa------CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 167890 0.73 0.279495
Target:  5'- gGGGCGGcccGGGGACCcucGCGGGggcaccgGCGcGUGg -3'
miRNA:   3'- -CCCGCCa--CCUCUGG---CGCCCa------CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 55811 0.74 0.261489
Target:  5'- gGGGCGGUGGAagaGGCCGUcccggccuGGGUggGCGGa- -3'
miRNA:   3'- -CCCGCCACCU---CUGGCG--------CCCA--CGCCac -5'
29108 3' -63.1 NC_006146.1 + 170416 0.74 0.2557
Target:  5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3'
miRNA:   3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 169485 0.74 0.2557
Target:  5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3'
miRNA:   3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 168553 0.74 0.2557
Target:  5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3'
miRNA:   3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 167621 0.74 0.2557
Target:  5'- gGGGCGGaggGGGGGgucCCGCGGGgcccgGCGcGUGc -3'
miRNA:   3'- -CCCGCCa--CCUCU---GGCGCCCa----CGC-CAC- -5'
29108 3' -63.1 NC_006146.1 + 68742 0.74 0.23306
Target:  5'- gGGGUGGUGGAGGCC-CaGGUggccaagcuucagGCGGUGc -3'
miRNA:   3'- -CCCGCCACCUCUGGcGcCCA-------------CGCCAC- -5'
29108 3' -63.1 NC_006146.1 + 34018 0.66 0.672924
Target:  5'- gGGGgGGUcGGGGCagGCGGGcGUGGUc -3'
miRNA:   3'- -CCCgCCAcCUCUGg-CGCCCaCGCCAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.