miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2911 3' -61.5 NC_001493.1 + 62597 0.66 0.701216
Target:  5'- cGGGCaCGGCCaCGGGcACGGCCacgGCCa -3'
miRNA:   3'- cUCUGgGCUGG-GCCCuUGCUGG---CGGc -5'
2911 3' -61.5 NC_001493.1 + 93656 0.66 0.701216
Target:  5'- gGAGGCUCGGCCCacuGGAACGcGaaGCCc -3'
miRNA:   3'- -CUCUGGGCUGGGc--CCUUGC-UggCGGc -5'
2911 3' -61.5 NC_001493.1 + 17603 0.66 0.691568
Target:  5'- uGGGACCCucGACCUcagaGGGggUGcCCGCa- -3'
miRNA:   3'- -CUCUGGG--CUGGG----CCCuuGCuGGCGgc -5'
2911 3' -61.5 NC_001493.1 + 133158 0.66 0.691568
Target:  5'- uGGGACCCucGACCUcagaGGGggUGcCCGCa- -3'
miRNA:   3'- -CUCUGGG--CUGGG----CCCuuGCuGGCGgc -5'
2911 3' -61.5 NC_001493.1 + 112466 0.66 0.691568
Target:  5'- uAGACUCacauuuCCCGGGAAuuCGACC-CCGg -3'
miRNA:   3'- cUCUGGGcu----GGGCCCUU--GCUGGcGGC- -5'
2911 3' -61.5 NC_001493.1 + 8500 0.66 0.685757
Target:  5'- cGAGACgCgCGGCCCcuccacguucgaagcGGGcACGGCgCGCCa -3'
miRNA:   3'- -CUCUG-G-GCUGGG---------------CCCuUGCUG-GCGGc -5'
2911 3' -61.5 NC_001493.1 + 28227 0.66 0.681875
Target:  5'- cGAGAgaCGA-CUGGGuaGACGGCCGCCc -3'
miRNA:   3'- -CUCUggGCUgGGCCC--UUGCUGGCGGc -5'
2911 3' -61.5 NC_001493.1 + 19073 0.66 0.672144
Target:  5'- aGGACCaaccCCCGGGAGaGACC-CCGg -3'
miRNA:   3'- cUCUGGgcu-GGGCCCUUgCUGGcGGC- -5'
2911 3' -61.5 NC_001493.1 + 63404 0.66 0.672144
Target:  5'- -uGACCaccacaccggCGAugcCCaCGGGAGCGACCGCa- -3'
miRNA:   3'- cuCUGG----------GCU---GG-GCCCUUGCUGGCGgc -5'
2911 3' -61.5 NC_001493.1 + 128251 0.66 0.661406
Target:  5'- cGGACgCGACCCGGGAgucucccACGGgggaGCCu -3'
miRNA:   3'- cUCUGgGCUGGGCCCU-------UGCUgg--CGGc -5'
2911 3' -61.5 NC_001493.1 + 12697 0.66 0.661406
Target:  5'- cGGACgCGACCCGGGAgucucccACGGgggaGCCu -3'
miRNA:   3'- cUCUGgGCUGGGCCCU-------UGCUgg--CGGc -5'
2911 3' -61.5 NC_001493.1 + 72781 0.66 0.6526
Target:  5'- -uGACuCCGAUuaUCGGGAucuCGGCCGCgGu -3'
miRNA:   3'- cuCUG-GGCUG--GGCCCUu--GCUGGCGgC- -5'
2911 3' -61.5 NC_001493.1 + 97964 0.67 0.617309
Target:  5'- aAGACCCucuugacaccgcucaGAUCCGGGAccGCGuuugucauaaACUGCCGa -3'
miRNA:   3'- cUCUGGG---------------CUGGGCCCU--UGC----------UGGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 50393 0.67 0.61339
Target:  5'- cGGGACCCaGCCacaCGGGcuCGuCCGCCc -3'
miRNA:   3'- -CUCUGGGcUGG---GCCCuuGCuGGCGGc -5'
2911 3' -61.5 NC_001493.1 + 129708 0.67 0.61339
Target:  5'- aGGGACgCGcCCCGGGuGACGACC-UCGn -3'
miRNA:   3'- -CUCUGgGCuGGGCCC-UUGCUGGcGGC- -5'
2911 3' -61.5 NC_001493.1 + 67031 0.67 0.603603
Target:  5'- -cGugCCGAucagcCCCGGGAugGA-UGCCa -3'
miRNA:   3'- cuCugGGCU-----GGGCCCUugCUgGCGGc -5'
2911 3' -61.5 NC_001493.1 + 27340 0.67 0.603603
Target:  5'- -cGAgUUGGCCUcugGGGAuauCGGCCGCCGu -3'
miRNA:   3'- cuCUgGGCUGGG---CCCUu--GCUGGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 124692 0.67 0.603603
Target:  5'- -cGACCgCGcuCCCGGGGAUGGCgGCg- -3'
miRNA:   3'- cuCUGG-GCu-GGGCCCUUGCUGgCGgc -5'
2911 3' -61.5 NC_001493.1 + 9137 0.67 0.603603
Target:  5'- -cGACCgCGcuCCCGGGGAUGGCgGCg- -3'
miRNA:   3'- cuCUGG-GCu-GGGCCCUUGCUGgCGgc -5'
2911 3' -61.5 NC_001493.1 + 129138 0.67 0.59774
Target:  5'- -cGACCCGuCCCGaGGcucacgaagcggugcAACGAUCGCgCGg -3'
miRNA:   3'- cuCUGGGCuGGGC-CC---------------UUGCUGGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.