miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 3' -54.5 NC_006146.1 + 135180 0.67 0.931
Target:  5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3'
miRNA:   3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5'
29121 3' -54.5 NC_006146.1 + 22651 0.67 0.925716
Target:  5'- cCUCaGGGUGCCuccccGGGucCCAGGCcagccGGa -3'
miRNA:   3'- -GAGaCCCACGGu----UCUuuGGUCCGa----CC- -5'
29121 3' -54.5 NC_006146.1 + 13417 0.67 0.925716
Target:  5'- cCUCaGGGUGCCuccccGGGucCCAGGCcagccGGa -3'
miRNA:   3'- -GAGaCCCACGGu----UCUuuGGUCCGa----CC- -5'
29121 3' -54.5 NC_006146.1 + 92505 0.67 0.920189
Target:  5'- gCUCagagUGGGUugaGCCAuGAGGCUugAGGUUGGa -3'
miRNA:   3'- -GAG----ACCCA---CGGUuCUUUGG--UCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 19573 0.67 0.925716
Target:  5'- cCUCaGGGUGCCuccccGGGucCCAGGCcagccGGa -3'
miRNA:   3'- -GAGaCCCACGGu----UCUuuGGUCCGa----CC- -5'
29121 3' -54.5 NC_006146.1 + 135366 0.67 0.931
Target:  5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3'
miRNA:   3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5'
29121 3' -54.5 NC_006146.1 + 135737 0.67 0.931
Target:  5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3'
miRNA:   3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5'
29121 3' -54.5 NC_006146.1 + 135645 0.67 0.931
Target:  5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3'
miRNA:   3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5'
29121 3' -54.5 NC_006146.1 + 135552 0.67 0.931
Target:  5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3'
miRNA:   3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5'
29121 3' -54.5 NC_006146.1 + 80009 0.67 0.936044
Target:  5'- uCUCaUGGGc-CCAGGuugaGGGCCAGGCUcGGg -3'
miRNA:   3'- -GAG-ACCCacGGUUC----UUUGGUCCGA-CC- -5'
29121 3' -54.5 NC_006146.1 + 97473 0.67 0.925716
Target:  5'- aUCc-GGUGCCAAGggGCCcGGCc-- -3'
miRNA:   3'- gAGacCCACGGUUCuuUGGuCCGacc -5'
29121 3' -54.5 NC_006146.1 + 157731 0.67 0.925716
Target:  5'- ---cGGGcagGCCGGGcAGGCCGGGUcuUGGg -3'
miRNA:   3'- gagaCCCa--CGGUUC-UUUGGUCCG--ACC- -5'
29121 3' -54.5 NC_006146.1 + 154654 0.67 0.925716
Target:  5'- ---cGGGcagGCCGGGcAGGCCGGGUcuUGGg -3'
miRNA:   3'- gagaCCCa--CGGUUC-UUUGGUCCG--ACC- -5'
29121 3' -54.5 NC_006146.1 + 142342 0.67 0.925716
Target:  5'- ---cGGGcagGCCGGGcAGGCCGGGUcuUGGg -3'
miRNA:   3'- gagaCCCa--CGGUUC-UUUGGUCCG--ACC- -5'
29121 3' -54.5 NC_006146.1 + 55403 0.67 0.925716
Target:  5'- gCUCcGGGaccCCAGGAcguACCuGGCUGGc -3'
miRNA:   3'- -GAGaCCCac-GGUUCUu--UGGuCCGACC- -5'
29121 3' -54.5 NC_006146.1 + 162033 0.67 0.920189
Target:  5'- -aCUGGGaGCCuGGggGCgggggCAGGCUGu -3'
miRNA:   3'- gaGACCCaCGGuUCuuUG-----GUCCGACc -5'
29121 3' -54.5 NC_006146.1 + 55167 0.67 0.914421
Target:  5'- -------cGCCGGGAGGCCAGGgUGGa -3'
miRNA:   3'- gagacccaCGGUUCUUUGGUCCgACC- -5'
29121 3' -54.5 NC_006146.1 + 127580 0.67 0.912046
Target:  5'- -cCUGGGcgGCCGAGGccgcgccGGCCGGGUgagagugacuaaccUGGg -3'
miRNA:   3'- gaGACCCa-CGGUUCU-------UUGGUCCG--------------ACC- -5'
29121 3' -54.5 NC_006146.1 + 28807 0.67 0.925716
Target:  5'- cCUCaGGGUGCCuccccGGGucCCAGGCcagccGGa -3'
miRNA:   3'- -GAGaCCCACGGu----UCUuuGGUCCGa----CC- -5'
29121 3' -54.5 NC_006146.1 + 135459 0.67 0.931
Target:  5'- gCUC-GGG-GCC-GGggGCCGGGUgccccUGGg -3'
miRNA:   3'- -GAGaCCCaCGGuUCuuUGGUCCG-----ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.