miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29121 5' -60.9 NC_006146.1 + 137234 0.66 0.738564
Target:  5'- gGUgggGGCCUGGGG--UCCCggGGaCCACa -3'
miRNA:   3'- gCGa--CCGGGCCUUgaAGGGa-CC-GGUG- -5'
29121 5' -60.9 NC_006146.1 + 47014 0.66 0.738564
Target:  5'- aGC-GGCCCGGucgGACUcgcgggcgCCCUGGgUGCg -3'
miRNA:   3'- gCGaCCGGGCC---UUGAa-------GGGACCgGUG- -5'
29121 5' -60.9 NC_006146.1 + 167816 0.66 0.738564
Target:  5'- gCGCgUGGCCCgcccccGGGuCUUCCCgGGCUc- -3'
miRNA:   3'- -GCG-ACCGGG------CCUuGAAGGGaCCGGug -5'
29121 5' -60.9 NC_006146.1 + 168748 0.66 0.738564
Target:  5'- gCGCgUGGCCCgcccccGGGuCUUCCCgGGCUc- -3'
miRNA:   3'- -GCG-ACCGGG------CCUuGAAGGGaCCGGug -5'
29121 5' -60.9 NC_006146.1 + 169680 0.66 0.738564
Target:  5'- gCGCgUGGCCCgcccccGGGuCUUCCCgGGCUc- -3'
miRNA:   3'- -GCG-ACCGGG------CCUuGAAGGGaCCGGug -5'
29121 5' -60.9 NC_006146.1 + 104115 0.66 0.738564
Target:  5'- cCGCcugGGCCCGGug--UCCa-GGUCGCa -3'
miRNA:   3'- -GCGa--CCGGGCCuugaAGGgaCCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 88284 0.66 0.729092
Target:  5'- uGCUGGCCUGGGAUauggagCCCaaguaGGCUg- -3'
miRNA:   3'- gCGACCGGGCCUUGaa----GGGa----CCGGug -5'
29121 5' -60.9 NC_006146.1 + 27897 0.66 0.729092
Target:  5'- aGCggaggGGaCCgGGAGCUgcUCCCacGGCCAa -3'
miRNA:   3'- gCGa----CC-GGgCCUUGA--AGGGa-CCGGUg -5'
29121 5' -60.9 NC_006146.1 + 100962 0.66 0.729092
Target:  5'- aGCaGGCCagcgCGGGGCggcucaCCCUGGUCAa -3'
miRNA:   3'- gCGaCCGG----GCCUUGaa----GGGACCGGUg -5'
29121 5' -60.9 NC_006146.1 + 138756 0.66 0.729092
Target:  5'- aGC-GGCCUGccACggCCCUGGCUAa -3'
miRNA:   3'- gCGaCCGGGCcuUGaaGGGACCGGUg -5'
29121 5' -60.9 NC_006146.1 + 29154 0.66 0.729092
Target:  5'- aCGCUGagccuuCCCGGuGCaccgUCCCUGGaCACu -3'
miRNA:   3'- -GCGACc-----GGGCCuUGa---AGGGACCgGUG- -5'
29121 5' -60.9 NC_006146.1 + 85611 0.66 0.729092
Target:  5'- aGCUGGCaCCGGGGCaaag--GGCCAg -3'
miRNA:   3'- gCGACCG-GGCCUUGaagggaCCGGUg -5'
29121 5' -60.9 NC_006146.1 + 157478 0.66 0.727187
Target:  5'- gGCUGGCCUGGGACccggggaggcaCCCUGaGgUGCu -3'
miRNA:   3'- gCGACCGGGCCUUGaa---------GGGAC-CgGUG- -5'
29121 5' -60.9 NC_006146.1 + 154400 0.66 0.727187
Target:  5'- gGCUGGCCUGGGACccggggaggcaCCCUGaGgUGCu -3'
miRNA:   3'- gCGACCGGGCCUUGaa---------GGGAC-CgGUG- -5'
29121 5' -60.9 NC_006146.1 + 151322 0.66 0.727187
Target:  5'- gGCUGGCCUGGGACccggggaggcaCCCUGaGgUGCu -3'
miRNA:   3'- gCGACCGGGCCUUGaa---------GGGAC-CgGUG- -5'
29121 5' -60.9 NC_006146.1 + 148244 0.66 0.727187
Target:  5'- gGCUGGCCUGGGACccggggaggcaCCCUGaGgUGCu -3'
miRNA:   3'- gCGACCGGGCCUUGaa---------GGGAC-CgGUG- -5'
29121 5' -60.9 NC_006146.1 + 145166 0.66 0.727187
Target:  5'- gGCUGGCCUGGGACccggggaggcaCCCUGaGgUGCu -3'
miRNA:   3'- gCGACCGGGCCUUGaa---------GGGAC-CgGUG- -5'
29121 5' -60.9 NC_006146.1 + 142088 0.66 0.727187
Target:  5'- gGCUGGCCUGGGACccggggaggcaCCCUGaGgUGCu -3'
miRNA:   3'- gCGACCGGGCCUUGaa---------GGGAC-CgGUG- -5'
29121 5' -60.9 NC_006146.1 + 128278 0.66 0.72528
Target:  5'- cCGCUGGCgUGGcacgucagcacguGCUUCUccuuCUGGUCGCg -3'
miRNA:   3'- -GCGACCGgGCCu------------UGAAGG----GACCGGUG- -5'
29121 5' -60.9 NC_006146.1 + 167639 0.66 0.719541
Target:  5'- cCGCggGGCCCGGcGCgUgCCgggGGCC-Cg -3'
miRNA:   3'- -GCGa-CCGGGCCuUGaAgGGa--CCGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.