miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29124 5' -58.9 NC_006146.1 + 170099 0.72 0.475554
Target:  5'- -aGGgGCcGGCGCCGCAggggggGCCggcGGGGCg -3'
miRNA:   3'- gaCCaUGaCCGCGGCGU------UGGa--CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 162328 0.67 0.730709
Target:  5'- uCUGc--CUGGUGCUGCAGCCcGGGcuGCa -3'
miRNA:   3'- -GACcauGACCGCGGCGUUGGaCCC--UG- -5'
29124 5' -58.9 NC_006146.1 + 159601 0.66 0.821563
Target:  5'- -aGGUccgaguuguagaACUGGCGCUGC----UGGGGCa -3'
miRNA:   3'- gaCCA------------UGACCGCGGCGuuggACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 157832 0.67 0.740306
Target:  5'- uCUGGgggACUGaGgGCgGCcGCCUuGGGGCc -3'
miRNA:   3'- -GACCa--UGAC-CgCGgCGuUGGA-CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 156994 0.66 0.80446
Target:  5'- -gGGgagGCgGGCGCCcuuGCCUGGaGGCa -3'
miRNA:   3'- gaCCa--UGaCCGCGGcguUGGACC-CUG- -5'
29124 5' -58.9 NC_006146.1 + 156927 0.75 0.33361
Target:  5'- gCUGGUuCUGGgGCUG-GACUUGGGACa -3'
miRNA:   3'- -GACCAuGACCgCGGCgUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 154754 0.67 0.740306
Target:  5'- uCUGGgggACUGaGgGCgGCcGCCUuGGGGCc -3'
miRNA:   3'- -GACCa--UGAC-CgCGgCGuUGGA-CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 153916 0.66 0.80446
Target:  5'- -gGGgagGCgGGCGCCcuuGCCUGGaGGCa -3'
miRNA:   3'- gaCCa--UGaCCGCGGcguUGGACC-CUG- -5'
29124 5' -58.9 NC_006146.1 + 153849 0.75 0.33361
Target:  5'- gCUGGUuCUGGgGCUG-GACUUGGGACa -3'
miRNA:   3'- -GACCAuGACCgCGGCgUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 151677 0.67 0.740306
Target:  5'- uCUGGgggACUGaGgGCgGCGcCUUGGGGCc -3'
miRNA:   3'- -GACCa--UGAC-CgCGgCGUuGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 150838 0.66 0.80446
Target:  5'- -gGGgagGCgGGCGCCcuuGCCUGGaGGCa -3'
miRNA:   3'- gaCCa--UGaCCGCGGcguUGGACC-CUG- -5'
29124 5' -58.9 NC_006146.1 + 150771 0.75 0.33361
Target:  5'- gCUGGUuCUGGgGCUG-GACUUGGGACa -3'
miRNA:   3'- -GACCAuGACCgCGGCgUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 148599 0.67 0.740306
Target:  5'- uCUGGgggACUGaGgGCgGCcGCCUuGGGGCc -3'
miRNA:   3'- -GACCa--UGAC-CgCGgCGuUGGA-CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 147760 0.66 0.80446
Target:  5'- -gGGgagGCgGGCGCCcuuGCCUGGaGGCa -3'
miRNA:   3'- gaCCa--UGaCCGCGGcguUGGACC-CUG- -5'
29124 5' -58.9 NC_006146.1 + 147694 0.7 0.561788
Target:  5'- gCUGGUuCUGG-GCUG-GACUUGGGACa -3'
miRNA:   3'- -GACCAuGACCgCGGCgUUGGACCCUG- -5'
29124 5' -58.9 NC_006146.1 + 146851 0.67 0.758283
Target:  5'- -cGGgcCUGGCucgggGCCGCGucaccccGCCaggGGGACg -3'
miRNA:   3'- gaCCauGACCG-----CGGCGU-------UGGa--CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 146517 0.66 0.821563
Target:  5'- -cGGagaGCgaaGGCGCCGCGcCCUGGaGCu -3'
miRNA:   3'- gaCCa--UGa--CCGCGGCGUuGGACCcUG- -5'
29124 5' -58.9 NC_006146.1 + 145521 0.67 0.740306
Target:  5'- uCUGGgggACUGaGgGCgGCcGCCUuGGGGCc -3'
miRNA:   3'- -GACCa--UGAC-CgCGgCGuUGGA-CCCUG- -5'
29124 5' -58.9 NC_006146.1 + 144683 0.66 0.80446
Target:  5'- -gGGgagGCgGGCGCCcuuGCCUGGaGGCg -3'
miRNA:   3'- gaCCa--UGaCCGCGGcguUGGACC-CUG- -5'
29124 5' -58.9 NC_006146.1 + 144616 0.75 0.33361
Target:  5'- gCUGGUuCUGGgGCUG-GACUUGGGACa -3'
miRNA:   3'- -GACCAuGACCgCGGCgUUGGACCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.