miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 3' -64.8 NC_006146.1 + 425 0.66 0.575057
Target:  5'- aGCCCCCcgcucGCCccucGGGUCGCGGGacacGCCc- -3'
miRNA:   3'- -CGGGGGc----CGGu---CCCAGUGCUC----CGGac -5'
29126 3' -64.8 NC_006146.1 + 62383 0.66 0.575057
Target:  5'- gGCCCCUGGCCguucagcucgcgAGGaagaggaccucGUCG-GAGGCCa- -3'
miRNA:   3'- -CGGGGGCCGG------------UCC-----------CAGUgCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 158271 0.66 0.546846
Target:  5'- --gCCUGGCC-GGGUCuaaGGuGGCCUGg -3'
miRNA:   3'- cggGGGCCGGuCCCAGug-CU-CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 73498 0.66 0.556205
Target:  5'- aGCaCCaGGCgCGGGGUCACGcgcAGGCUUa -3'
miRNA:   3'- -CGgGGgCCG-GUCCCAGUGC---UCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 11611 0.66 0.565611
Target:  5'- gGCCCCUGuuugccgacuGCgAGGGcCcCGAGGCCc- -3'
miRNA:   3'- -CGGGGGC----------CGgUCCCaGuGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 43583 0.66 0.565611
Target:  5'- cGUUCCCGGggagCGGGG-CGgGAGGCCg- -3'
miRNA:   3'- -CGGGGGCCg---GUCCCaGUgCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 143652 0.66 0.565611
Target:  5'- gGCCCCgGGCgCAGGGcaagGCGAugGGCgaGg -3'
miRNA:   3'- -CGGGGgCCG-GUCCCag--UGCU--CCGgaC- -5'
29126 3' -64.8 NC_006146.1 + 146729 0.66 0.565611
Target:  5'- gGCCCCgGGCgCAGGGcaagGCGAugGGCgaGg -3'
miRNA:   3'- -CGGGGgCCG-GUCCCag--UGCU--CCGgaC- -5'
29126 3' -64.8 NC_006146.1 + 149807 0.66 0.565611
Target:  5'- gGCCCCgGGCgCAGGGcaagGCGAugGGCgaGg -3'
miRNA:   3'- -CGGGGgCCG-GUCCCag--UGCU--CCGgaC- -5'
29126 3' -64.8 NC_006146.1 + 152885 0.66 0.565611
Target:  5'- gGCCCCgGGCgCAGGGcaagGCGAugGGCgaGg -3'
miRNA:   3'- -CGGGGgCCG-GUCCCag--UGCU--CCGgaC- -5'
29126 3' -64.8 NC_006146.1 + 155963 0.66 0.565611
Target:  5'- gGCCCCgGGCgCAGGGcaagGCGAugGGCgaGg -3'
miRNA:   3'- -CGGGGgCCG-GUCCCag--UGCU--CCGgaC- -5'
29126 3' -64.8 NC_006146.1 + 3542 0.66 0.575057
Target:  5'- aGCCCCCGGCCGGcGccgccgCGCGugcaGCCg- -3'
miRNA:   3'- -CGGGGGCCGGUC-Cca----GUGCuc--CGGac -5'
29126 3' -64.8 NC_006146.1 + 1356 0.66 0.575057
Target:  5'- aGCCCCCcgcucGCCccucGGGUCGCGGGacacGCCc- -3'
miRNA:   3'- -CGGGGGc----CGGu---CCCAGUGCUC----CGGac -5'
29126 3' -64.8 NC_006146.1 + 2288 0.66 0.575057
Target:  5'- aGCCCCCcgcucGCCccucGGGUCGCGGGacacGCCc- -3'
miRNA:   3'- -CGGGGGc----CGGu---CCCAGUGCUC----CGGac -5'
29126 3' -64.8 NC_006146.1 + 3220 0.66 0.575057
Target:  5'- aGCCCCCcgcucGCCccucGGGUCGCGGGacacGCCc- -3'
miRNA:   3'- -CGGGGGc----CGGu---CCCAGUGCUC----CGGac -5'
29126 3' -64.8 NC_006146.1 + 32772 0.66 0.575057
Target:  5'- gGCgCgCUGGCCGGGGUCGCcAGcGUCg- -3'
miRNA:   3'- -CGgG-GGCCGGUCCCAGUGcUC-CGGac -5'
29126 3' -64.8 NC_006146.1 + 122557 0.66 0.575057
Target:  5'- gGCCCgCUGGCCAGa--CugGAcGCCUGg -3'
miRNA:   3'- -CGGG-GGCCGGUCccaGugCUcCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 136602 0.66 0.575057
Target:  5'- gGCgCgCUGGCCGGGGUCGCcAGcGUCg- -3'
miRNA:   3'- -CGgG-GGCCGGUCCCAGUGcUC-CGGac -5'
29126 3' -64.8 NC_006146.1 + 747 0.66 0.575057
Target:  5'- aGCCCCCGGCCGGcGccgccgCGCGugcaGCCg- -3'
miRNA:   3'- -CGGGGGCCGGUC-Cca----GUGCuc--CGGac -5'
29126 3' -64.8 NC_006146.1 + 1678 0.66 0.575057
Target:  5'- aGCCCCCGGCCGGcGccgccgCGCGugcaGCCg- -3'
miRNA:   3'- -CGGGGGCCGGUC-Cca----GUGCuc--CGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.