miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 3' -64.8 NC_006146.1 + 425 0.66 0.575057
Target:  5'- aGCCCCCcgcucGCCccucGGGUCGCGGGacacGCCc- -3'
miRNA:   3'- -CGGGGGc----CGGu---CCCAGUGCUC----CGGac -5'
29126 3' -64.8 NC_006146.1 + 506 0.67 0.509959
Target:  5'- cGCCCCCgaGGCCcccaGGGGagGCccGGCCUc -3'
miRNA:   3'- -CGGGGG--CCGG----UCCCagUGcuCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 747 0.66 0.575057
Target:  5'- aGCCCCCGGCCGGcGccgccgCGCGugcaGCCg- -3'
miRNA:   3'- -CGGGGGCCGGUC-Cca----GUGCuc--CGGac -5'
29126 3' -64.8 NC_006146.1 + 1144 0.7 0.352741
Target:  5'- uGCCCCC-GCgAGGGUCcCcGGGCCg- -3'
miRNA:   3'- -CGGGGGcCGgUCCCAGuGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 1356 0.66 0.575057
Target:  5'- aGCCCCCcgcucGCCccucGGGUCGCGGGacacGCCc- -3'
miRNA:   3'- -CGGGGGc----CGGu---CCCAGUGCUC----CGGac -5'
29126 3' -64.8 NC_006146.1 + 1437 0.67 0.509959
Target:  5'- cGCCCCCgaGGCCcccaGGGGagGCccGGCCUc -3'
miRNA:   3'- -CGGGGG--CCGG----UCCCagUGcuCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 1678 0.66 0.575057
Target:  5'- aGCCCCCGGCCGGcGccgccgCGCGugcaGCCg- -3'
miRNA:   3'- -CGGGGGCCGGUC-Cca----GUGCuc--CGGac -5'
29126 3' -64.8 NC_006146.1 + 2076 0.7 0.352741
Target:  5'- uGCCCCC-GCgAGGGUCcCcGGGCCg- -3'
miRNA:   3'- -CGGGGGcCGgUCCCAGuGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 2288 0.66 0.575057
Target:  5'- aGCCCCCcgcucGCCccucGGGUCGCGGGacacGCCc- -3'
miRNA:   3'- -CGGGGGc----CGGu---CCCAGUGCUC----CGGac -5'
29126 3' -64.8 NC_006146.1 + 2369 0.67 0.509959
Target:  5'- cGCCCCCgaGGCCcccaGGGGagGCccGGCCUc -3'
miRNA:   3'- -CGGGGG--CCGG----UCCCagUGcuCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 2610 0.66 0.575057
Target:  5'- aGCCCCCGGCCGGcGccgccgCGCGugcaGCCg- -3'
miRNA:   3'- -CGGGGGCCGGUC-Cca----GUGCuc--CGGac -5'
29126 3' -64.8 NC_006146.1 + 3008 0.7 0.352741
Target:  5'- uGCCCCC-GCgAGGGUCcCcGGGCCg- -3'
miRNA:   3'- -CGGGGGcCGgUCCCAGuGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 3220 0.66 0.575057
Target:  5'- aGCCCCCcgcucGCCccucGGGUCGCGGGacacGCCc- -3'
miRNA:   3'- -CGGGGGc----CGGu---CCCAGUGCUC----CGGac -5'
29126 3' -64.8 NC_006146.1 + 3301 0.67 0.509959
Target:  5'- cGCCCCCgaGGCCcccaGGGGagGCccGGCCUc -3'
miRNA:   3'- -CGGGGG--CCGG----UCCCagUGcuCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 3542 0.66 0.575057
Target:  5'- aGCCCCCGGCCGGcGccgccgCGCGugcaGCCg- -3'
miRNA:   3'- -CGGGGGCCGGUC-Cca----GUGCuc--CGGac -5'
29126 3' -64.8 NC_006146.1 + 4666 0.66 0.537537
Target:  5'- cGUCCUgGGCCGGGuGg-GCGAGGCg-- -3'
miRNA:   3'- -CGGGGgCCGGUCC-CagUGCUCCGgac -5'
29126 3' -64.8 NC_006146.1 + 4951 0.73 0.203038
Target:  5'- uGCCCCgGGgaCCAGGGgcCACGAGaGCCUc -3'
miRNA:   3'- -CGGGGgCC--GGUCCCa-GUGCUC-CGGAc -5'
29126 3' -64.8 NC_006146.1 + 5174 0.67 0.482991
Target:  5'- aGUUCCUGGCCAGGcccGagACGuuuucccuGGGCCUGg -3'
miRNA:   3'- -CGGGGGCCGGUCC---CagUGC--------UCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 6426 0.67 0.4654
Target:  5'- gGCCCagGGCCaugugggcccuGGGGUcCAUGGGGCCc- -3'
miRNA:   3'- -CGGGggCCGG-----------UCCCA-GUGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 9459 0.73 0.203038
Target:  5'- cGCCCCaCGcGCCuuGGGUuccCGCGGGGCCa- -3'
miRNA:   3'- -CGGGG-GC-CGGu-CCCA---GUGCUCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.