miRNA display CGI


Results 21 - 40 of 193 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 3' -64.8 NC_006146.1 + 10218 0.67 0.499995
Target:  5'- uGCCUcuaCCGGCCcuGGUCAUGugccggcuccugaAGGCCUc -3'
miRNA:   3'- -CGGG---GGCCGGucCCAGUGC-------------UCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 11129 0.66 0.525519
Target:  5'- cCCCUCGGCCuaccugggggcgguGGuGGUCACgGAGGCa-- -3'
miRNA:   3'- cGGGGGCCGG--------------UC-CCAGUG-CUCCGgac -5'
29126 3' -64.8 NC_006146.1 + 11140 0.66 0.546846
Target:  5'- uUCCCCGGcCCAGGuaaaaaCACaGGGGCCg- -3'
miRNA:   3'- cGGGGGCC-GGUCCca----GUG-CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 11487 0.66 0.518173
Target:  5'- aGCCaCCCGGaCuCGGGGgccgUCAUGAucguggacagcgcGGCCUGc -3'
miRNA:   3'- -CGG-GGGCC-G-GUCCC----AGUGCU-------------CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 11611 0.66 0.565611
Target:  5'- gGCCCCUGuuugccgacuGCgAGGGcCcCGAGGCCc- -3'
miRNA:   3'- -CGGGGGC----------CGgUCCCaGuGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 12883 0.68 0.439654
Target:  5'- gGCaggCCgGGUCucGGGUCugGGGGUCUGu -3'
miRNA:   3'- -CGg--GGgCCGGu-CCCAGugCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 13456 0.66 0.528283
Target:  5'- -aCCCCGGCagcccGGGUgGCcccaGAGGCCa- -3'
miRNA:   3'- cgGGGGCCGgu---CCCAgUG----CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 13705 0.66 0.528283
Target:  5'- cGCUUUCGGCCucucGGGUCcACcAGGCCg- -3'
miRNA:   3'- -CGGGGGCCGGu---CCCAG-UGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 14837 0.67 0.491906
Target:  5'- gGUCUCgGGCCcGGGgccgCGgGAGGCCg- -3'
miRNA:   3'- -CGGGGgCCGGuCCCa---GUgCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 15036 0.77 0.117262
Target:  5'- gGCgCCUGGCCAGGGccCGCcGGGCCUGc -3'
miRNA:   3'- -CGgGGGCCGGUCCCa-GUGcUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 15961 0.69 0.367611
Target:  5'- gGCaggCCGGUCucGGGUCugGGGGUCUGu -3'
miRNA:   3'- -CGgg-GGCCGGu-CCCAGugCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 16534 0.66 0.528283
Target:  5'- -aCCCCGGCagcccGGGUgGCcccaGAGGCCa- -3'
miRNA:   3'- cgGGGGCCGgu---CCCAgUG----CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 16783 0.66 0.528283
Target:  5'- cGCUUUCGGCCucucGGGUCcACcAGGCCg- -3'
miRNA:   3'- -CGGGGGCCGGu---CCCAG-UGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 19038 0.68 0.439654
Target:  5'- gGCaggCCgGGUCucGGGUCugGGGGUCUGu -3'
miRNA:   3'- -CGg--GGgCCGGu-CCCAGugCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 19612 0.66 0.528283
Target:  5'- -aCCCCGGCagcccGGGUgGCcccaGAGGCCa- -3'
miRNA:   3'- cgGGGGCCGgu---CCCAgUG----CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 19861 0.66 0.528283
Target:  5'- cGCUUUCGGCCucucGGGUCcACcAGGCCg- -3'
miRNA:   3'- -CGGGGGCCGGu---CCCAG-UGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 19947 0.68 0.430419
Target:  5'- gGCCUCCcugggcagaucagGGCCGGGGgcgucugcgaggUCAgGAGGCCc- -3'
miRNA:   3'- -CGGGGG-------------CCGGUCCC------------AGUgCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 22116 0.68 0.439654
Target:  5'- gGCaggCCgGGUCucGGGUCugGGGGUCUGu -3'
miRNA:   3'- -CGg--GGgCCGGu-CCCAGugCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 22690 0.66 0.528283
Target:  5'- -aCCCCGGCagcccGGGUgGCcccaGAGGCCa- -3'
miRNA:   3'- cgGGGGCCGgu---CCCAgUG----CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 24039 0.69 0.390712
Target:  5'- cCCCCUGG-CGGGGUgACGcGGCCc- -3'
miRNA:   3'- cGGGGGCCgGUCCCAgUGCuCCGGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.