Results 21 - 40 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29126 | 3' | -64.8 | NC_006146.1 | + | 142061 | 0.72 | 0.25503 |
Target: 5'- gGCCaCCCGggcuGCCGGGGUCccucCGGcuGGCCUGg -3' miRNA: 3'- -CGG-GGGC----CGGUCCCAGu---GCU--CCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 47508 | 0.72 | 0.260791 |
Target: 5'- gGCCgCCgCGGCCAGuuccagccaGGUUGCGGGGCCc- -3' miRNA: 3'- -CGG-GG-GCCGGUC---------CCAGUGCUCCGGac -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 52481 | 0.71 | 0.27263 |
Target: 5'- -aCCUCGGCCAGGGaCugGAcgacGGCCg- -3' miRNA: 3'- cgGGGGCCGGUCCCaGugCU----CCGGac -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 118053 | 0.71 | 0.278709 |
Target: 5'- aGCCCCCGGgCGGGGgcgGCGGcGGCUc- -3' miRNA: 3'- -CGGGGGCCgGUCCCag-UGCU-CCGGac -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 124137 | 0.71 | 0.278709 |
Target: 5'- aGCCaUCCGcCCGGGGUCGgGAGGCgaGg -3' miRNA: 3'- -CGG-GGGCcGGUCCCAGUgCUCCGgaC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 170186 | 0.71 | 0.278709 |
Target: 5'- gGCUCCCgaGGgCGGGG-C-CGGGGCCUGg -3' miRNA: 3'- -CGGGGG--CCgGUCCCaGuGCUCCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 169255 | 0.71 | 0.278709 |
Target: 5'- gGCUCCCgaGGgCGGGG-C-CGGGGCCUGg -3' miRNA: 3'- -CGGGGG--CCgGUCCCaGuGCUCCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 168323 | 0.71 | 0.278709 |
Target: 5'- gGCUCCCgaGGgCGGGG-C-CGGGGCCUGg -3' miRNA: 3'- -CGGGGG--CCgGUCCCaGuGCUCCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 167391 | 0.71 | 0.278709 |
Target: 5'- gGCUCCCgaGGgCGGGG-C-CGGGGCCUGg -3' miRNA: 3'- -CGGGGG--CCgGUCCCaGuGCUCCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 101955 | 0.71 | 0.284896 |
Target: 5'- uGCCCCCuGGCUAGGGgcUC-CG-GGCuCUGg -3' miRNA: 3'- -CGGGGG-CCGGUCCC--AGuGCuCCG-GAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 114066 | 0.71 | 0.284896 |
Target: 5'- cGCCCCCGccGCCAGaGGcCGCcucgGGGGCCa- -3' miRNA: 3'- -CGGGGGC--CGGUC-CCaGUG----CUCCGGac -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 111256 | 0.71 | 0.291191 |
Target: 5'- -gCCCCGGaUAGGGUCAUuguccuGGGCCUGg -3' miRNA: 3'- cgGGGGCCgGUCCCAGUGc-----UCCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 115333 | 0.71 | 0.297594 |
Target: 5'- gGCaCCCCGGaCucGGUCAuCGAGGCCUu -3' miRNA: 3'- -CG-GGGGCCgGucCCAGU-GCUCCGGAc -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 165710 | 0.71 | 0.297594 |
Target: 5'- uCCCCCaGGcCCAGGGaaaACGucucGGGCCUGg -3' miRNA: 3'- cGGGGG-CC-GGUCCCag-UGC----UCCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 106179 | 0.71 | 0.304106 |
Target: 5'- aUCCCCGGCCugcugacacGGGUCcCGggccuccugccaGGGCCUGg -3' miRNA: 3'- cGGGGGCCGGu--------CCCAGuGC------------UCCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 125486 | 0.71 | 0.304106 |
Target: 5'- --aCCCGGCCGGGGccUCGCGcuGGCCc- -3' miRNA: 3'- cggGGGCCGGUCCC--AGUGCu-CCGGac -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 71447 | 0.7 | 0.31006 |
Target: 5'- uGCCCCCGGCUcuGGGGauguggaacuguuUC-CaGGGCCUGc -3' miRNA: 3'- -CGGGGGCCGG--UCCC-------------AGuGcUCCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 142683 | 0.7 | 0.310727 |
Target: 5'- uGCCCuCCGGCU-GGGUCG-GAcGGUCUGg -3' miRNA: 3'- -CGGG-GGCCGGuCCCAGUgCU-CCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 113505 | 0.7 | 0.310727 |
Target: 5'- -gCgUCGGCCGGgcacGGUCGCGGGGCCa- -3' miRNA: 3'- cgGgGGCCGGUC----CCAGUGCUCCGGac -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 60866 | 0.7 | 0.310727 |
Target: 5'- -aUCCCGG---GGGUCACGAGGCCa- -3' miRNA: 3'- cgGGGGCCgguCCCAGUGCUCCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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