miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 3' -64.8 NC_006146.1 + 142874 0.7 0.310727
Target:  5'- uGCCCuCCGGCU-GGGUCG-GAcGGUCUGg -3'
miRNA:   3'- -CGGG-GGCCGGuCCCAGUgCU-CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 126782 0.7 0.310727
Target:  5'- uGCCCCCccuccucGCCGGGcagC-CGGGGCCUGg -3'
miRNA:   3'- -CGGGGGc------CGGUCCca-GuGCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 170330 0.7 0.317457
Target:  5'- cGCCCCCGGCCccucuccuGGGagGCcacgugugGAGGCCc- -3'
miRNA:   3'- -CGGGGGCCGGu-------CCCagUG--------CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 167535 0.7 0.317457
Target:  5'- cGCCCCCGGCCccucuccuGGGagGCcacgugugGAGGCCc- -3'
miRNA:   3'- -CGGGGGCCGGu-------CCCagUG--------CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 168467 0.7 0.317457
Target:  5'- cGCCCCCGGCCccucuccuGGGagGCcacgugugGAGGCCc- -3'
miRNA:   3'- -CGGGGGCCGGu-------CCCagUG--------CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 169399 0.7 0.317457
Target:  5'- cGCCCCCGGCCccucuccuGGGagGCcacgugugGAGGCCc- -3'
miRNA:   3'- -CGGGGGCCGGu-------CCCagUG--------CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 99553 0.7 0.330544
Target:  5'- aGCCCCCGGggcagagaUCGGGGUCcaggagguagaagACG-GGCUUGg -3'
miRNA:   3'- -CGGGGGCC--------GGUCCCAG-------------UGCuCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 157656 0.7 0.350547
Target:  5'- aGCCCCUGGaCCAGgcugauguagaacuGGUCugGccgcAGGCCUu -3'
miRNA:   3'- -CGGGGGCC-GGUC--------------CCAGugC----UCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 1144 0.7 0.352741
Target:  5'- uGCCCCC-GCgAGGGUCcCcGGGCCg- -3'
miRNA:   3'- -CGGGGGcCGgUCCCAGuGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 2076 0.7 0.352741
Target:  5'- uGCCCCC-GCgAGGGUCcCcGGGCCg- -3'
miRNA:   3'- -CGGGGGcCGgUCCCAGuGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 3008 0.7 0.352741
Target:  5'- uGCCCCC-GCgAGGGUCcCcGGGCCg- -3'
miRNA:   3'- -CGGGGGcCGgUCCCAGuGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 27640 0.69 0.360123
Target:  5'- aGUUCCgGGCCAGcGUCACcGGGCCa- -3'
miRNA:   3'- -CGGGGgCCGGUCcCAGUGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 15961 0.69 0.367611
Target:  5'- gGCaggCCGGUCucGGGUCugGGGGUCUGu -3'
miRNA:   3'- -CGgg-GGCCGGu-CCCAGugCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 101404 0.69 0.367611
Target:  5'- uGCCCCUGGUUAGG--UACGAGGCg-- -3'
miRNA:   3'- -CGGGGGCCGGUCCcaGUGCUCCGgac -5'
29126 3' -64.8 NC_006146.1 + 137881 0.69 0.374442
Target:  5'- cGCCCCgGGCCggcagGGGGUCcccguggACaGGGCCg- -3'
miRNA:   3'- -CGGGGgCCGG-----UCCCAG-------UGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 65718 0.69 0.374442
Target:  5'- gGCuCCCCGGCCccGGUCACuGGacggugcGGCCUc -3'
miRNA:   3'- -CG-GGGGCCGGucCCAGUG-CU-------CCGGAc -5'
29126 3' -64.8 NC_006146.1 + 114169 0.69 0.378274
Target:  5'- gGCCCUgGGCagCAGGGUCACcaugaugcaaaaguaGAGGCUc- -3'
miRNA:   3'- -CGGGGgCCG--GUCCCAGUG---------------CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 138833 0.69 0.382907
Target:  5'- gGCgCCCGGaCAGGGUUA-GAGGCgaGg -3'
miRNA:   3'- -CGgGGGCCgGUCCCAGUgCUCCGgaC- -5'
29126 3' -64.8 NC_006146.1 + 39998 0.69 0.389927
Target:  5'- gGCCCguaguggCCGGUguGGGcguagCAgGGGGCCUGc -3'
miRNA:   3'- -CGGG-------GGCCGguCCCa----GUgCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 167164 0.69 0.390712
Target:  5'- aCCCCgGGCUgaAGGGcCACGcGGCCc- -3'
miRNA:   3'- cGGGGgCCGG--UCCCaGUGCuCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.