miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 3' -64.8 NC_006146.1 + 24287 0.67 0.482991
Target:  5'- -aCCCUGGCCGGGGgCugGAcGCUg- -3'
miRNA:   3'- cgGGGGCCGGUCCCaGugCUcCGGac -5'
29126 3' -64.8 NC_006146.1 + 25194 0.68 0.439654
Target:  5'- gGCaggCCgGGUCucGGGUCugGGGGUCUGu -3'
miRNA:   3'- -CGg--GGgCCGGu-CCCAGugCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 25768 0.66 0.528283
Target:  5'- -aCCCCGGCagcccGGGUgGCcccaGAGGCCa- -3'
miRNA:   3'- cgGGGGCCGgu---CCCAgUG----CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 26016 0.66 0.528283
Target:  5'- cGCUUUCGGCCucucGGGUCcACcAGGCCg- -3'
miRNA:   3'- -CGGGGGCCGGu---CCCAG-UGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 27640 0.69 0.360123
Target:  5'- aGUUCCgGGCCAGcGUCACcGGGCCa- -3'
miRNA:   3'- -CGGGGgCCGGUCcCAGUGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 28272 0.68 0.439654
Target:  5'- gGCaggCCgGGUCucGGGUCugGGGGUCUGu -3'
miRNA:   3'- -CGg--GGgCCGGu-CCCAGugCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 28846 0.66 0.528283
Target:  5'- -aCCCCGGCagcccGGGUgGCcccaGAGGCCa- -3'
miRNA:   3'- cgGGGGCCGgu---CCCAgUG----CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 29094 0.66 0.528283
Target:  5'- cGCUUUCGGCCucucGGGUCcACcAGGCCg- -3'
miRNA:   3'- -CGGGGGCCGGu---CCCAG-UGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 32772 0.66 0.575057
Target:  5'- gGCgCgCUGGCCGGGGUCGCcAGcGUCg- -3'
miRNA:   3'- -CGgG-GGCCGGUCCCAGUGcUC-CGGac -5'
29126 3' -64.8 NC_006146.1 + 33025 0.66 0.528283
Target:  5'- aCCCCCugccGGCCcGGG--GCGGGGCCc- -3'
miRNA:   3'- cGGGGG----CCGGuCCCagUGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 34050 0.78 0.098733
Target:  5'- gGCCUaugCCGGCCGGGGgucccguggCACGGGGCCg- -3'
miRNA:   3'- -CGGG---GGCCGGUCCCa--------GUGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 38453 0.67 0.474155
Target:  5'- uCCCCUGccuCCGGGGUgACGGGuGCCa- -3'
miRNA:   3'- cGGGGGCc--GGUCCCAgUGCUC-CGGac -5'
29126 3' -64.8 NC_006146.1 + 39071 0.66 0.575057
Target:  5'- gGUCgCCGGCCuccGGUCugGggaAGGCCa- -3'
miRNA:   3'- -CGGgGGCCGGuc-CCAGugC---UCCGGac -5'
29126 3' -64.8 NC_006146.1 + 39796 0.67 0.509959
Target:  5'- aGCUCCCGGCUucuGGG--ACGGcGGCCg- -3'
miRNA:   3'- -CGGGGGCCGGu--CCCagUGCU-CCGGac -5'
29126 3' -64.8 NC_006146.1 + 39998 0.69 0.389927
Target:  5'- gGCCCguaguggCCGGUguGGGcguagCAgGGGGCCUGc -3'
miRNA:   3'- -CGGG-------GGCCGguCCCa----GUgCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 41702 0.66 0.546846
Target:  5'- cGCUCaCCGGCgGGGGgugcggCGCuGuGGCCUu -3'
miRNA:   3'- -CGGG-GGCCGgUCCCa-----GUG-CuCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 41849 0.69 0.390712
Target:  5'- gGgCCgUGGCCAGGGgcuacCGGGGCCUc -3'
miRNA:   3'- -CgGGgGCCGGUCCCagu--GCUCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 43583 0.66 0.565611
Target:  5'- cGUUCCCGGggagCGGGG-CGgGAGGCCg- -3'
miRNA:   3'- -CGGGGGCCg---GUCCCaGUgCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 44379 0.68 0.422948
Target:  5'- aCCCCCGcCCGGGGggCGugUGGGGCCg- -3'
miRNA:   3'- cGGGGGCcGGUCCCa-GU--GCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 44787 0.66 0.565611
Target:  5'- -aCCCaGGCCGGGGaUCugGAuGGUgUGu -3'
miRNA:   3'- cgGGGgCCGGUCCC-AGugCU-CCGgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.