miRNA display CGI


Results 41 - 60 of 193 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 3' -64.8 NC_006146.1 + 4951 0.73 0.203038
Target:  5'- uGCCCCgGGgaCCAGGGgcCACGAGaGCCUc -3'
miRNA:   3'- -CGGGGgCC--GGUCCCa-GUGCUC-CGGAc -5'
29126 3' -64.8 NC_006146.1 + 50128 0.68 0.41474
Target:  5'- aCCUCC-GCCAGGGaCAUGAGGCg-- -3'
miRNA:   3'- cGGGGGcCGGUCCCaGUGCUCCGgac -5'
29126 3' -64.8 NC_006146.1 + 55008 0.68 0.455867
Target:  5'- aGCCCCCcgggcgggaugggGGCgGgcgggauggGGGUCGgggcCGGGGCCUGc -3'
miRNA:   3'- -CGGGGG-------------CCGgU---------CCCAGU----GCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 97869 0.68 0.439654
Target:  5'- aCCCCgGGCCGuGGa-ACGAGGgCCUGa -3'
miRNA:   3'- cGGGGgCCGGUcCCagUGCUCC-GGAC- -5'
29126 3' -64.8 NC_006146.1 + 47663 0.68 0.404216
Target:  5'- gGCCCagcgcggCGGCCAGGGUCuCGuggauggaggacuuGGGCgUGg -3'
miRNA:   3'- -CGGGg------GCCGGUCCCAGuGC--------------UCCGgAC- -5'
29126 3' -64.8 NC_006146.1 + 169255 0.71 0.278709
Target:  5'- gGCUCCCgaGGgCGGGG-C-CGGGGCCUGg -3'
miRNA:   3'- -CGGGGG--CCgGUCCCaGuGCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 55760 0.76 0.138992
Target:  5'- cGCCCggcggCgGGCCAGGGgcaGCGAGGCCa- -3'
miRNA:   3'- -CGGG-----GgCCGGUCCCag-UGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 61912 0.77 0.117262
Target:  5'- aGCCCCUGaGCguGGGUCccucCGAGGCCUu -3'
miRNA:   3'- -CGGGGGC-CGguCCCAGu---GCUCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 142683 0.7 0.310727
Target:  5'- uGCCCuCCGGCU-GGGUCG-GAcGGUCUGg -3'
miRNA:   3'- -CGGG-GGCCGGuCCCAGUgCU-CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 15961 0.69 0.367611
Target:  5'- gGCaggCCGGUCucGGGUCugGGGGUCUGu -3'
miRNA:   3'- -CGgg-GGCCGGu-CCCAGugCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 99553 0.7 0.330544
Target:  5'- aGCCCCCGGggcagagaUCGGGGUCcaggagguagaagACG-GGCUUGg -3'
miRNA:   3'- -CGGGGGCC--------GGUCCCAG-------------UGCuCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 106179 0.71 0.304106
Target:  5'- aUCCCCGGCCugcugacacGGGUCcCGggccuccugccaGGGCCUGg -3'
miRNA:   3'- cGGGGGCCGGu--------CCCAGuGC------------UCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 112444 0.73 0.207793
Target:  5'- cGCCCCCuccGGCCguGGuGGUCACuGGGCUUGu -3'
miRNA:   3'- -CGGGGG---CCGG--UC-CCAGUGcUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 147441 0.68 0.422948
Target:  5'- gGCCa-CGGCCAGGGcCuCGuAGGCCg- -3'
miRNA:   3'- -CGGggGCCGGUCCCaGuGC-UCCGGac -5'
29126 3' -64.8 NC_006146.1 + 52700 0.68 0.422948
Target:  5'- aGCUCCgGGCgGGaGGUCAgGGGGCg-- -3'
miRNA:   3'- -CGGGGgCCGgUC-CCAGUgCUCCGgac -5'
29126 3' -64.8 NC_006146.1 + 41849 0.69 0.390712
Target:  5'- gGgCCgUGGCCAGGGgcuacCGGGGCCUc -3'
miRNA:   3'- -CgGGgGCCGGUCCCagu--GCUCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 25194 0.68 0.439654
Target:  5'- gGCaggCCgGGUCucGGGUCugGGGGUCUGu -3'
miRNA:   3'- -CGg--GGgCCGGu-CCCAGugCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 62383 0.66 0.575057
Target:  5'- gGCCCCUGGCCguucagcucgcgAGGaagaggaccucGUCG-GAGGCCa- -3'
miRNA:   3'- -CGGGGGCCGG------------UCC-----------CAGUgCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 100278 0.67 0.4654
Target:  5'- aGCCUCCuaGCgGGGG-CugGcAGGCCUGc -3'
miRNA:   3'- -CGGGGGc-CGgUCCCaGugC-UCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 19038 0.68 0.439654
Target:  5'- gGCaggCCgGGUCucGGGUCugGGGGUCUGu -3'
miRNA:   3'- -CGg--GGgCCGGu-CCCAGugCUCCGGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.