miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 3' -64.8 NC_006146.1 + 146625 1.1 0.000514
Target:  5'- aGCCCCCGGCCAGGGUCACGAGGCCUGg -3'
miRNA:   3'- -CGGGGGCCGGUCCCAGUGCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 15961 0.69 0.367611
Target:  5'- gGCaggCCGGUCucGGGUCugGGGGUCUGu -3'
miRNA:   3'- -CGgg-GGCCGGu-CCCAGugCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 157656 0.7 0.350547
Target:  5'- aGCCCCUGGaCCAGgcugauguagaacuGGUCugGccgcAGGCCUu -3'
miRNA:   3'- -CGGGGGCC-GGUC--------------CCAGugC----UCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 71447 0.7 0.31006
Target:  5'- uGCCCCCGGCUcuGGGGauguggaacuguuUC-CaGGGCCUGc -3'
miRNA:   3'- -CGGGGGCCGG--UCCC-------------AGuGcUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 52481 0.71 0.27263
Target:  5'- -aCCUCGGCCAGGGaCugGAcgacGGCCg- -3'
miRNA:   3'- cgGGGGCCGGUCCCaGugCU----CCGGac -5'
29126 3' -64.8 NC_006146.1 + 162855 0.69 0.390712
Target:  5'- aCCCCCagGGCC-GGGUCcaGCGGGuGCCa- -3'
miRNA:   3'- cGGGGG--CCGGuCCCAG--UGCUC-CGGac -5'
29126 3' -64.8 NC_006146.1 + 65718 0.69 0.374442
Target:  5'- gGCuCCCCGGCCccGGUCACuGGacggugcGGCCUc -3'
miRNA:   3'- -CG-GGGGCCGGucCCAGUG-CU-------CCGGAc -5'
29126 3' -64.8 NC_006146.1 + 117503 0.73 0.207793
Target:  5'- gGCCUCCuggaGGCCAGGGaauaggucUCACGccucucccucgGGGCCUGg -3'
miRNA:   3'- -CGGGGG----CCGGUCCC--------AGUGC-----------UCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 167535 0.7 0.317457
Target:  5'- cGCCCCCGGCCccucuccuGGGagGCcacgugugGAGGCCc- -3'
miRNA:   3'- -CGGGGGCCGGu-------CCCagUG--------CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 142874 0.7 0.310727
Target:  5'- uGCCCuCCGGCU-GGGUCG-GAcGGUCUGg -3'
miRNA:   3'- -CGGG-GGCCGGuCCCAGUgCU-CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 4951 0.73 0.203038
Target:  5'- uGCCCCgGGgaCCAGGGgcCACGAGaGCCUc -3'
miRNA:   3'- -CGGGGgCC--GGUCCCa-GUGCUC-CGGAc -5'
29126 3' -64.8 NC_006146.1 + 55760 0.76 0.138992
Target:  5'- cGCCCggcggCgGGCCAGGGgcaGCGAGGCCa- -3'
miRNA:   3'- -CGGG-----GgCCGGUCCCag-UGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 50128 0.68 0.41474
Target:  5'- aCCUCC-GCCAGGGaCAUGAGGCg-- -3'
miRNA:   3'- cGGGGGcCGGUCCCaGUGCUCCGgac -5'
29126 3' -64.8 NC_006146.1 + 47663 0.68 0.404216
Target:  5'- gGCCCagcgcggCGGCCAGGGUCuCGuggauggaggacuuGGGCgUGg -3'
miRNA:   3'- -CGGGg------GCCGGUCCCAGuGC--------------UCCGgAC- -5'
29126 3' -64.8 NC_006146.1 + 99553 0.7 0.330544
Target:  5'- aGCCCCCGGggcagagaUCGGGGUCcaggagguagaagACG-GGCUUGg -3'
miRNA:   3'- -CGGGGGCC--------GGUCCCAG-------------UGCuCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 169255 0.71 0.278709
Target:  5'- gGCUCCCgaGGgCGGGG-C-CGGGGCCUGg -3'
miRNA:   3'- -CGGGGG--CCgGUCCCaGuGCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 167391 0.71 0.278709
Target:  5'- gGCUCCCgaGGgCGGGG-C-CGGGGCCUGg -3'
miRNA:   3'- -CGGGGG--CCgGUCCCaGuGCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 61912 0.77 0.117262
Target:  5'- aGCCCCUGaGCguGGGUCccucCGAGGCCUu -3'
miRNA:   3'- -CGGGGGC-CGguCCCAGu---GCUCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 142683 0.7 0.310727
Target:  5'- uGCCCuCCGGCU-GGGUCG-GAcGGUCUGg -3'
miRNA:   3'- -CGGG-GGCCGGuCCCAGUgCU-CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 168467 0.7 0.317457
Target:  5'- cGCCCCCGGCCccucuccuGGGagGCcacgugugGAGGCCc- -3'
miRNA:   3'- -CGGGGGCCGGu-------CCCagUG--------CUCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.