miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 3' -64.8 NC_006146.1 + 146625 1.1 0.000514
Target:  5'- aGCCCCCGGCCAGGGUCACGAGGCCUGg -3'
miRNA:   3'- -CGGGGGCCGGUCCCAGUGCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 101955 0.71 0.284896
Target:  5'- uGCCCCCuGGCUAGGGgcUC-CG-GGCuCUGg -3'
miRNA:   3'- -CGGGGG-CCGGUCCC--AGuGCuCCG-GAC- -5'
29126 3' -64.8 NC_006146.1 + 106179 0.71 0.304106
Target:  5'- aUCCCCGGCCugcugacacGGGUCcCGggccuccugccaGGGCCUGg -3'
miRNA:   3'- cGGGGGCCGGu--------CCCAGuGC------------UCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 62383 0.66 0.575057
Target:  5'- gGCCCCUGGCCguucagcucgcgAGGaagaggaccucGUCG-GAGGCCa- -3'
miRNA:   3'- -CGGGGGCCGG------------UCC-----------CAGUgCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 61912 0.77 0.117262
Target:  5'- aGCCCCUGaGCguGGGUCccucCGAGGCCUu -3'
miRNA:   3'- -CGGGGGC-CGguCCCAGu---GCUCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 55760 0.76 0.138992
Target:  5'- cGCCCggcggCgGGCCAGGGgcaGCGAGGCCa- -3'
miRNA:   3'- -CGGG-----GgCCGGUCCCag-UGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 9459 0.73 0.203038
Target:  5'- cGCCCCaCGcGCCuuGGGUuccCGCGGGGCCa- -3'
miRNA:   3'- -CGGGG-GC-CGGu-CCCA---GUGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 117503 0.73 0.207793
Target:  5'- gGCCUCCuggaGGCCAGGGaauaggucUCACGccucucccucgGGGCCUGg -3'
miRNA:   3'- -CGGGGG----CCGGUCCC--------AGUGC-----------UCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 47508 0.72 0.260791
Target:  5'- gGCCgCCgCGGCCAGuuccagccaGGUUGCGGGGCCc- -3'
miRNA:   3'- -CGG-GG-GCCGGUC---------CCAGUGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 170186 0.71 0.278709
Target:  5'- gGCUCCCgaGGgCGGGG-C-CGGGGCCUGg -3'
miRNA:   3'- -CGGGGG--CCgGUCCCaGuGCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 167391 0.71 0.278709
Target:  5'- gGCUCCCgaGGgCGGGG-C-CGGGGCCUGg -3'
miRNA:   3'- -CGGGGG--CCgGUCCCaGuGCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 79627 0.72 0.243822
Target:  5'- cGUCCCgGGgaCAGGGUCAC-AGGCCg- -3'
miRNA:   3'- -CGGGGgCCg-GUCCCAGUGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 47261 0.85 0.031713
Target:  5'- gGCCCCUGGCCcGGGUgACGAGGuCCUGc -3'
miRNA:   3'- -CGGGGGCCGGuCCCAgUGCUCC-GGAC- -5'
29126 3' -64.8 NC_006146.1 + 168323 0.71 0.278709
Target:  5'- gGCUCCCgaGGgCGGGG-C-CGGGGCCUGg -3'
miRNA:   3'- -CGGGGG--CCgGUCCCaGuGCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 34050 0.78 0.098733
Target:  5'- gGCCUaugCCGGCCGGGGgucccguggCACGGGGCCg- -3'
miRNA:   3'- -CGGG---GGCCGGUCCCa--------GUGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 112444 0.73 0.207793
Target:  5'- cGCCCCCuccGGCCguGGuGGUCACuGGGCUUGu -3'
miRNA:   3'- -CGGGGG---CCGG--UC-CCAGUGcUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 169255 0.71 0.278709
Target:  5'- gGCUCCCgaGGgCGGGG-C-CGGGGCCUGg -3'
miRNA:   3'- -CGGGGG--CCgGUCCCaGuGCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 111256 0.71 0.291191
Target:  5'- -gCCCCGGaUAGGGUCAUuguccuGGGCCUGg -3'
miRNA:   3'- cgGGGGCCgGUCCCAGUGc-----UCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 70157 0.77 0.114429
Target:  5'- gGCUCCUGGCCGGGGcgCugGuGGCCg- -3'
miRNA:   3'- -CGGGGGCCGGUCCCa-GugCuCCGGac -5'
29126 3' -64.8 NC_006146.1 + 4951 0.73 0.203038
Target:  5'- uGCCCCgGGgaCCAGGGgcCACGAGaGCCUc -3'
miRNA:   3'- -CGGGGgCC--GGUCCCa-GUGCUC-CGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.