miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 3' -64.8 NC_006146.1 + 146625 1.1 0.000514
Target:  5'- aGCCCCCGGCCAGGGUCACGAGGCCUGg -3'
miRNA:   3'- -CGGGGGCCGGUCCCAGUGCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 47261 0.85 0.031713
Target:  5'- gGCCCCUGGCCcGGGUgACGAGGuCCUGc -3'
miRNA:   3'- -CGGGGGCCGGuCCCAgUGCUCC-GGAC- -5'
29126 3' -64.8 NC_006146.1 + 117714 0.79 0.08095
Target:  5'- cGCCCCCcaaGGCCGGGG-C-CGAGGCCg- -3'
miRNA:   3'- -CGGGGG---CCGGUCCCaGuGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 34050 0.78 0.098733
Target:  5'- gGCCUaugCCGGCCGGGGgucccguggCACGGGGCCg- -3'
miRNA:   3'- -CGGG---GGCCGGUCCCa--------GUGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 70157 0.77 0.114429
Target:  5'- gGCUCCUGGCCGGGGcgCugGuGGCCg- -3'
miRNA:   3'- -CGGGGGCCGGUCCCa-GugCuCCGGac -5'
29126 3' -64.8 NC_006146.1 + 15036 0.77 0.117262
Target:  5'- gGCgCCUGGCCAGGGccCGCcGGGCCUGc -3'
miRNA:   3'- -CGgGGGCCGGUCCCa-GUGcUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 61912 0.77 0.117262
Target:  5'- aGCCCCUGaGCguGGGUCccucCGAGGCCUu -3'
miRNA:   3'- -CGGGGGC-CGguCCCAGu---GCUCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 55760 0.76 0.138992
Target:  5'- cGCCCggcggCgGGCCAGGGgcaGCGAGGCCa- -3'
miRNA:   3'- -CGGG-----GgCCGGUCCCag-UGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 9459 0.73 0.203038
Target:  5'- cGCCCCaCGcGCCuuGGGUuccCGCGGGGCCa- -3'
miRNA:   3'- -CGGGG-GC-CGGu-CCCA---GUGCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 4951 0.73 0.203038
Target:  5'- uGCCCCgGGgaCCAGGGgcCACGAGaGCCUc -3'
miRNA:   3'- -CGGGGgCC--GGUCCCa-GUGCUC-CGGAc -5'
29126 3' -64.8 NC_006146.1 + 112444 0.73 0.207793
Target:  5'- cGCCCCCuccGGCCguGGuGGUCACuGGGCUUGu -3'
miRNA:   3'- -CGGGGG---CCGG--UC-CCAGUGcUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 117503 0.73 0.207793
Target:  5'- gGCCUCCuggaGGCCAGGGaauaggucUCACGccucucccucgGGGCCUGg -3'
miRNA:   3'- -CGGGGG----CCGGUCCC--------AGUGC-----------UCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 126404 0.73 0.222637
Target:  5'- -aCCCCGGacgcCCGGGGUCGCGAgcacggcacaGGCCa- -3'
miRNA:   3'- cgGGGGCC----GGUCCCAGUGCU----------CCGGac -5'
29126 3' -64.8 NC_006146.1 + 79627 0.72 0.243822
Target:  5'- cGUCCCgGGgaCAGGGUCAC-AGGCCg- -3'
miRNA:   3'- -CGGGGgCCg-GUCCCAGUGcUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 154373 0.72 0.25503
Target:  5'- gGCCaCCCGggcuGCCGGGGUCccucCGGcuGGCCUGg -3'
miRNA:   3'- -CGG-GGGC----CGGUCCCAGu---GCU--CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 142061 0.72 0.25503
Target:  5'- gGCCaCCCGggcuGCCGGGGUCccucCGGcuGGCCUGg -3'
miRNA:   3'- -CGG-GGGC----CGGUCCCAGu---GCU--CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 148217 0.72 0.25503
Target:  5'- gGCCaCCCGggcuGCCGGGGUCccucCGGcuGGCCUGg -3'
miRNA:   3'- -CGG-GGGC----CGGUCCCAGu---GCU--CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 157451 0.72 0.25503
Target:  5'- gGCCaCCCGggcuGCCGGGGUCccucCGGcuGGCCUGg -3'
miRNA:   3'- -CGG-GGGC----CGGUCCCAGu---GCU--CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 124518 0.72 0.25503
Target:  5'- cGgCCCUGGCgAGGGaCG-GGGGCCUGg -3'
miRNA:   3'- -CgGGGGCCGgUCCCaGUgCUCCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 145139 0.72 0.25503
Target:  5'- gGCCaCCCGggcuGCCGGGGUCccucCGGcuGGCCUGg -3'
miRNA:   3'- -CGG-GGGC----CGGUCCCAGu---GCU--CCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.