miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 3' -64.8 NC_006146.1 + 146729 0.66 0.565611
Target:  5'- gGCCCCgGGCgCAGGGcaagGCGAugGGCgaGg -3'
miRNA:   3'- -CGGGGgCCG-GUCCCag--UGCU--CCGgaC- -5'
29126 3' -64.8 NC_006146.1 + 149807 0.66 0.565611
Target:  5'- gGCCCCgGGCgCAGGGcaagGCGAugGGCgaGg -3'
miRNA:   3'- -CGGGGgCCG-GUCCCag--UGCU--CCGgaC- -5'
29126 3' -64.8 NC_006146.1 + 99120 0.66 0.556205
Target:  5'- uGCCCuCCGGCCucAGGcGUCuccacaGGGGCUc- -3'
miRNA:   3'- -CGGG-GGCCGG--UCC-CAGug----CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 73498 0.66 0.556205
Target:  5'- aGCaCCaGGCgCGGGGUCACGcgcAGGCUUa -3'
miRNA:   3'- -CGgGGgCCG-GUCCCAGUGC---UCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 11140 0.66 0.546846
Target:  5'- uUCCCCGGcCCAGGuaaaaaCACaGGGGCCg- -3'
miRNA:   3'- cGGGGGCC-GGUCCca----GUG-CUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 123405 0.66 0.546846
Target:  5'- aGUCCCCGGCCuuGGGGUagcCGAcGGUgaGc -3'
miRNA:   3'- -CGGGGGCCGG--UCCCAgu-GCU-CCGgaC- -5'
29126 3' -64.8 NC_006146.1 + 41702 0.66 0.546846
Target:  5'- cGCUCaCCGGCgGGGGgugcggCGCuGuGGCCUu -3'
miRNA:   3'- -CGGG-GGCCGgUCCCa-----GUG-CuCCGGAc -5'
29126 3' -64.8 NC_006146.1 + 155192 0.66 0.546846
Target:  5'- --gCCUGGCC-GGGUCuaaGGuGGCCUGg -3'
miRNA:   3'- cggGGGCCGGuCCCAGug-CU-CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 152114 0.66 0.546846
Target:  5'- --gCCUGGCC-GGGUCuaaGGuGGCCUGg -3'
miRNA:   3'- cggGGGCCGGuCCCAGug-CU-CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 158271 0.66 0.546846
Target:  5'- --gCCUGGCC-GGGUCuaaGGuGGCCUGg -3'
miRNA:   3'- cggGGGCCGGuCCCAGug-CU-CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 149036 0.66 0.546846
Target:  5'- --gCCUGGCC-GGGUCuaaGGuGGCCUGg -3'
miRNA:   3'- cggGGGCCGGuCCCAGug-CU-CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 145958 0.66 0.546846
Target:  5'- --gCCUGGCC-GGGUCuaaGGuGGCCUGg -3'
miRNA:   3'- cggGGGCCGGuCCCAGug-CU-CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 142880 0.66 0.546846
Target:  5'- --gCCUGGCC-GGGUCuaaGGuGGCCUGg -3'
miRNA:   3'- cggGGGCCGGuCCCAGug-CU-CCGGAC- -5'
29126 3' -64.8 NC_006146.1 + 118431 0.66 0.546846
Target:  5'- aGUCCCUGGCCGaGGUCcugcACGGcGGCUa- -3'
miRNA:   3'- -CGGGGGCCGGUcCCAG----UGCU-CCGGac -5'
29126 3' -64.8 NC_006146.1 + 115915 0.66 0.546846
Target:  5'- gGCUUCCGGCCAccccGGG-UACGGGGgCa- -3'
miRNA:   3'- -CGGGGGCCGGU----CCCaGUGCUCCgGac -5'
29126 3' -64.8 NC_006146.1 + 165642 0.66 0.544047
Target:  5'- aCCCCCGGCUcgggcguuGGGUCcGugaccccacagcccCGAGGCCg- -3'
miRNA:   3'- cGGGGGCCGGu-------CCCAG-U--------------GCUCCGGac -5'
29126 3' -64.8 NC_006146.1 + 123505 0.66 0.541254
Target:  5'- uGgCCCUGGCCAcggucgaccccaggcGGGUCGCGGguGGCa-- -3'
miRNA:   3'- -CgGGGGCCGGU---------------CCCAGUGCU--CCGgac -5'
29126 3' -64.8 NC_006146.1 + 4666 0.66 0.537537
Target:  5'- cGUCCUgGGCCGGGuGg-GCGAGGCg-- -3'
miRNA:   3'- -CGGGGgCCGGUCC-CagUGCUCCGgac -5'
29126 3' -64.8 NC_006146.1 + 50408 0.66 0.537537
Target:  5'- cGUCCUCGGCCgccAGGGacggCAgGcAGGCCg- -3'
miRNA:   3'- -CGGGGGCCGG---UCCCa---GUgC-UCCGGac -5'
29126 3' -64.8 NC_006146.1 + 86321 0.66 0.537537
Target:  5'- aGgCCCUGGgCAGGGUCuuGAucagGGCCc- -3'
miRNA:   3'- -CgGGGGCCgGUCCCAGugCU----CCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.