Results 21 - 40 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29126 | 3' | -64.8 | NC_006146.1 | + | 152885 | 0.66 | 0.565611 |
Target: 5'- gGCCCCgGGCgCAGGGcaagGCGAugGGCgaGg -3' miRNA: 3'- -CGGGGgCCG-GUCCCag--UGCU--CCGgaC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 155963 | 0.66 | 0.565611 |
Target: 5'- gGCCCCgGGCgCAGGGcaagGCGAugGGCgaGg -3' miRNA: 3'- -CGGGGgCCG-GUCCCag--UGCU--CCGgaC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 73498 | 0.66 | 0.556205 |
Target: 5'- aGCaCCaGGCgCGGGGUCACGcgcAGGCUUa -3' miRNA: 3'- -CGgGGgCCG-GUCCCAGUGC---UCCGGAc -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 99120 | 0.66 | 0.556205 |
Target: 5'- uGCCCuCCGGCCucAGGcGUCuccacaGGGGCUc- -3' miRNA: 3'- -CGGG-GGCCGG--UCC-CAGug----CUCCGGac -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 41702 | 0.66 | 0.546846 |
Target: 5'- cGCUCaCCGGCgGGGGgugcggCGCuGuGGCCUu -3' miRNA: 3'- -CGGG-GGCCGgUCCCa-----GUG-CuCCGGAc -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 11140 | 0.66 | 0.546846 |
Target: 5'- uUCCCCGGcCCAGGuaaaaaCACaGGGGCCg- -3' miRNA: 3'- cGGGGGCC-GGUCCca----GUG-CUCCGGac -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 123405 | 0.66 | 0.546846 |
Target: 5'- aGUCCCCGGCCuuGGGGUagcCGAcGGUgaGc -3' miRNA: 3'- -CGGGGGCCGG--UCCCAgu-GCU-CCGgaC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 115915 | 0.66 | 0.546846 |
Target: 5'- gGCUUCCGGCCAccccGGG-UACGGGGgCa- -3' miRNA: 3'- -CGGGGGCCGGU----CCCaGUGCUCCgGac -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 118431 | 0.66 | 0.546846 |
Target: 5'- aGUCCCUGGCCGaGGUCcugcACGGcGGCUa- -3' miRNA: 3'- -CGGGGGCCGGUcCCAG----UGCU-CCGGac -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 142880 | 0.66 | 0.546846 |
Target: 5'- --gCCUGGCC-GGGUCuaaGGuGGCCUGg -3' miRNA: 3'- cggGGGCCGGuCCCAGug-CU-CCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 145958 | 0.66 | 0.546846 |
Target: 5'- --gCCUGGCC-GGGUCuaaGGuGGCCUGg -3' miRNA: 3'- cggGGGCCGGuCCCAGug-CU-CCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 149036 | 0.66 | 0.546846 |
Target: 5'- --gCCUGGCC-GGGUCuaaGGuGGCCUGg -3' miRNA: 3'- cggGGGCCGGuCCCAGug-CU-CCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 152114 | 0.66 | 0.546846 |
Target: 5'- --gCCUGGCC-GGGUCuaaGGuGGCCUGg -3' miRNA: 3'- cggGGGCCGGuCCCAGug-CU-CCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 155192 | 0.66 | 0.546846 |
Target: 5'- --gCCUGGCC-GGGUCuaaGGuGGCCUGg -3' miRNA: 3'- cggGGGCCGGuCCCAGug-CU-CCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 158271 | 0.66 | 0.546846 |
Target: 5'- --gCCUGGCC-GGGUCuaaGGuGGCCUGg -3' miRNA: 3'- cggGGGCCGGuCCCAGug-CU-CCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 165642 | 0.66 | 0.544047 |
Target: 5'- aCCCCCGGCUcgggcguuGGGUCcGugaccccacagcccCGAGGCCg- -3' miRNA: 3'- cGGGGGCCGGu-------CCCAG-U--------------GCUCCGGac -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 123505 | 0.66 | 0.541254 |
Target: 5'- uGgCCCUGGCCAcggucgaccccaggcGGGUCGCGGguGGCa-- -3' miRNA: 3'- -CgGGGGCCGGU---------------CCCAGUGCU--CCGgac -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 82492 | 0.66 | 0.537537 |
Target: 5'- cCCCCCGGCacaAGccauaggccguGGUCA--GGGCCUGc -3' miRNA: 3'- cGGGGGCCGg--UC-----------CCAGUgcUCCGGAC- -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 4666 | 0.66 | 0.537537 |
Target: 5'- cGUCCUgGGCCGGGuGg-GCGAGGCg-- -3' miRNA: 3'- -CGGGGgCCGGUCC-CagUGCUCCGgac -5' |
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29126 | 3' | -64.8 | NC_006146.1 | + | 86321 | 0.66 | 0.537537 |
Target: 5'- aGgCCCUGGgCAGGGUCuuGAucagGGCCc- -3' miRNA: 3'- -CgGGGGCCgGUCCCAGugCU----CCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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