miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29126 5' -55.6 NC_006146.1 + 150988 0.7 0.735024
Target:  5'- -cCAGggGagagguaagGCGGCUCUCCCGGGCu-- -3'
miRNA:   3'- caGUCuuU---------UGUUGGGAGGGCCCGcca -5'
29126 5' -55.6 NC_006146.1 + 129483 0.68 0.8666
Target:  5'- -cUAGAAAACucggguGCCC-CCCaGGCGGa -3'
miRNA:   3'- caGUCUUUUGu-----UGGGaGGGcCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 55811 0.68 0.8666
Target:  5'- gGUCAauGAGuACAGCCagcgCCUGGGUGGg -3'
miRNA:   3'- -CAGU--CUUuUGUUGGga--GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 126505 0.69 0.813075
Target:  5'- --aGGAAGGCGccguGCCCggccccacacgcccCCCGGGCGGg -3'
miRNA:   3'- cagUCUUUUGU----UGGGa-------------GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 122505 0.69 0.79173
Target:  5'- gGUCgAGAGAAUggaGGCCgCggagCCCGGGUGGUu -3'
miRNA:   3'- -CAG-UCUUUUG---UUGG-Ga---GGGCCCGCCA- -5'
29126 5' -55.6 NC_006146.1 + 64222 0.7 0.772371
Target:  5'- -gCAGGAGGCAcaucugcGCCUgggCCgGGGCGGg -3'
miRNA:   3'- caGUCUUUUGU-------UGGGa--GGgCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 124772 0.7 0.75438
Target:  5'- aUCAGAGcACGGCCagggCCCGGGCa-- -3'
miRNA:   3'- cAGUCUUuUGUUGGga--GGGCCCGcca -5'
29126 5' -55.6 NC_006146.1 + 157144 0.7 0.735024
Target:  5'- -cCAGggGagagguaagGCGGCUCUCCCGGGCu-- -3'
miRNA:   3'- caGUCuuU---------UGUUGGGAGGGCCCGcca -5'
29126 5' -55.6 NC_006146.1 + 154066 0.7 0.735024
Target:  5'- -cCAGggGagagguaagGCGGCUCUCCCGGGCu-- -3'
miRNA:   3'- caGUCuuU---------UGUUGGGAGGGCCCGcca -5'
29126 5' -55.6 NC_006146.1 + 108389 0.67 0.873957
Target:  5'- -aCAGAAcacGCAGCCC-CCCaGGGCcaGGUg -3'
miRNA:   3'- caGUCUUu--UGUUGGGaGGG-CCCG--CCA- -5'
29126 5' -55.6 NC_006146.1 + 60400 0.67 0.888018
Target:  5'- --uGGAGAACAucugcACCCUCCUggaccuggccgGGGUGGa -3'
miRNA:   3'- cagUCUUUUGU-----UGGGAGGG-----------CCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 92084 0.67 0.909844
Target:  5'- --uGGggGGCGGCCCggCCUggggcugcugcugggGGGCGGg -3'
miRNA:   3'- cagUCuuUUGUUGGGa-GGG---------------CCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 20575 0.66 0.939861
Target:  5'- -aCAGAcuAGcCGGCCUgcgCCCGGGCGa- -3'
miRNA:   3'- caGUCU--UUuGUUGGGa--GGGCCCGCca -5'
29126 5' -55.6 NC_006146.1 + 94097 0.66 0.93939
Target:  5'- -cCAGAGAGCAGCggCCUCCUgauagccguguggGGGCGu- -3'
miRNA:   3'- caGUCUUUUGUUG--GGAGGG-------------CCCGCca -5'
29126 5' -55.6 NC_006146.1 + 169560 0.66 0.935047
Target:  5'- -aCAGggGuuguuACUCUCCCauGGGUGGUa -3'
miRNA:   3'- caGUCuuUugu--UGGGAGGG--CCCGCCA- -5'
29126 5' -55.6 NC_006146.1 + 100127 0.66 0.929997
Target:  5'- uUCAGAAuguCuuCCaUCuCCGGGCGGg -3'
miRNA:   3'- cAGUCUUuu-GuuGGgAG-GGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 118035 0.66 0.924708
Target:  5'- ---cGAGGACcacgGACCUggagccCCCGGGCGGg -3'
miRNA:   3'- caguCUUUUG----UUGGGa-----GGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 72448 0.66 0.924708
Target:  5'- -cCAGAGAcUGGCC--CCCGGGCGGc -3'
miRNA:   3'- caGUCUUUuGUUGGgaGGGCCCGCCa -5'
29126 5' -55.6 NC_006146.1 + 117773 0.66 0.919181
Target:  5'- --gAGGAGGCAACCgUcgcgcuccCCCGGGcCGGg -3'
miRNA:   3'- cagUCUUUUGUUGGgA--------GGGCCC-GCCa -5'
29126 5' -55.6 NC_006146.1 + 15117 0.66 0.913417
Target:  5'- -cCAGGgccaccGAGCGGCUCUUCUGcGGCGGg -3'
miRNA:   3'- caGUCU------UUUGUUGGGAGGGC-CCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.