miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29127 5' -62.3 NC_006146.1 + 106201 0.65 0.683939
Target:  5'- uCCCGGGccuccuGCCAGGGccugguguccugGGGGAGUAUa-- -3'
miRNA:   3'- -GGGCCC------CGGUCCCa-----------CCUCUCGUAcga -5'
29127 5' -62.3 NC_006146.1 + 44771 0.66 0.680071
Target:  5'- gCCCGGcgggcggggaacccaGGCCGGGGaucUGGAuGGUGUGUUu -3'
miRNA:   3'- -GGGCC---------------CCGGUCCC---ACCUcUCGUACGA- -5'
29127 5' -62.3 NC_006146.1 + 67359 0.66 0.680071
Target:  5'- cCUCGGGGuCCgggucccacgaguacGGGGaGGGGGGCucgGUGCg -3'
miRNA:   3'- -GGGCCCC-GG---------------UCCCaCCUCUCG---UACGa -5'
29127 5' -62.3 NC_006146.1 + 101062 0.66 0.676198
Target:  5'- uCCCGaGGGCCAcGGGcucaugcugUGGGGcAGCAcuucGCg -3'
miRNA:   3'- -GGGC-CCCGGU-CCC---------ACCUC-UCGUa---CGa -5'
29127 5' -62.3 NC_006146.1 + 39554 0.66 0.676198
Target:  5'- gCUGGaugucaauGGCCAGGauccUGGAGGGCAUGa- -3'
miRNA:   3'- gGGCC--------CCGGUCCc---ACCUCUCGUACga -5'
29127 5' -62.3 NC_006146.1 + 167761 0.66 0.676198
Target:  5'- --aGGGGCC-GGGUGGGcGcGCAUGgCUc -3'
miRNA:   3'- gggCCCCGGuCCCACCU-CuCGUAC-GA- -5'
29127 5' -62.3 NC_006146.1 + 49581 0.66 0.676198
Target:  5'- gCUGaGGCCAGGGUGGGGcuguggauGGUGUGg- -3'
miRNA:   3'- gGGCcCCGGUCCCACCUC--------UCGUACga -5'
29127 5' -62.3 NC_006146.1 + 18385 0.66 0.676198
Target:  5'- uCCUGGuGGCCGGGGUGGuGAu------ -3'
miRNA:   3'- -GGGCC-CCGGUCCCACCuCUcguacga -5'
29127 5' -62.3 NC_006146.1 + 104976 0.66 0.675229
Target:  5'- gCCUGGGGCUcccgAGGGggcucUGGGGAGaCAcucaacucuccacUGCUc -3'
miRNA:   3'- -GGGCCCCGG----UCCC-----ACCUCUC-GU-------------ACGA- -5'
29127 5' -62.3 NC_006146.1 + 44515 0.66 0.673289
Target:  5'- gUCCGGGGUuucaggcugacgggCGGaggacGGUGGGGGGC-UGCg -3'
miRNA:   3'- -GGGCCCCG--------------GUC-----CCACCUCUCGuACGa -5'
29127 5' -62.3 NC_006146.1 + 12633 0.66 0.667464
Target:  5'- aCCCGGGGCUGGGccagaguccccccgaGUGGcucaAGGGCcacuaccagacgcuGUGCa -3'
miRNA:   3'- -GGGCCCCGGUCC---------------CACC----UCUCG--------------UACGa -5'
29127 5' -62.3 NC_006146.1 + 139362 0.66 0.666492
Target:  5'- -gCGGcGCCGGGG-GGGGuGCcUGCUg -3'
miRNA:   3'- ggGCCcCGGUCCCaCCUCuCGuACGA- -5'
29127 5' -62.3 NC_006146.1 + 47659 0.66 0.666492
Target:  5'- gCCCGGcccagcgcggcGGCCAGGGUcucguggauggaGGAcuuGGGCGUGg- -3'
miRNA:   3'- -GGGCC-----------CCGGUCCCA------------CCU---CUCGUACga -5'
29127 5' -62.3 NC_006146.1 + 147071 0.66 0.656761
Target:  5'- uCCCGGcguagggaaaGGCCAGGGagagagaagUGGGcGAGCugggGCUc -3'
miRNA:   3'- -GGGCC----------CCGGUCCC---------ACCU-CUCGua--CGA- -5'
29127 5' -62.3 NC_006146.1 + 86324 0.66 0.647012
Target:  5'- gCCCGGaagcugaugaaGGCCAGccauuGGUGGAGGuGgAUGCc -3'
miRNA:   3'- -GGGCC-----------CCGGUC-----CCACCUCU-CgUACGa -5'
29127 5' -62.3 NC_006146.1 + 68947 0.66 0.647012
Target:  5'- gCCCGGagccccuaGCCAGGG-GGcAGGGCAgagccGCUg -3'
miRNA:   3'- -GGGCCc-------CGGUCCCaCC-UCUCGUa----CGA- -5'
29127 5' -62.3 NC_006146.1 + 64102 0.66 0.641157
Target:  5'- aCCUGGGGUCcucgaggauggcacGGGUGGAGGaCAcGCUg -3'
miRNA:   3'- -GGGCCCCGGu-------------CCCACCUCUcGUaCGA- -5'
29127 5' -62.3 NC_006146.1 + 26140 0.66 0.627489
Target:  5'- aCCGGGGCCc-GGUcGGAaaGAGCAcggggGCUu -3'
miRNA:   3'- gGGCCCCGGucCCA-CCU--CUCGUa----CGA- -5'
29127 5' -62.3 NC_006146.1 + 152528 0.67 0.617729
Target:  5'- cCCCGGccaccaGGaCCAGGGU---GAGCAUGCc -3'
miRNA:   3'- -GGGCC------CC-GGUCCCAccuCUCGUACGa -5'
29127 5' -62.3 NC_006146.1 + 169061 0.67 0.617729
Target:  5'- gCCCGGGGuCCcGGG-GGGcGGCGcGCg -3'
miRNA:   3'- -GGGCCCC-GGuCCCaCCUcUCGUaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.