Results 1 - 20 of 119 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 110821 | 0.66 | 0.939861 |
Target: 5'- cGGCgauugcccgUAGCUCCacgGGAcGAGGCGGcGCc -3' miRNA: 3'- -CCGa--------GUCGAGGca-CCU-CUUCGUCuCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 169169 | 0.66 | 0.929997 |
Target: 5'- gGGC-CGGCgCCugcagGGGGGgccGGCGGGGCg -3' miRNA: 3'- -CCGaGUCGaGGca---CCUCU---UCGUCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 41023 | 0.66 | 0.929997 |
Target: 5'- gGGCgUCAGagCCGUGG-GAGG-AGGGCc -3' miRNA: 3'- -CCG-AGUCgaGGCACCuCUUCgUCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 169728 | 0.66 | 0.939861 |
Target: 5'- cGCUCAGaUCgGcgcGGGGGAGCcccGGGGCg -3' miRNA: 3'- cCGAGUCgAGgCa--CCUCUUCG---UCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 154660 | 0.66 | 0.919181 |
Target: 5'- cGC-CGGCUgcaCCGUGGuGgcGgGGGGCg -3' miRNA: 3'- cCGaGUCGA---GGCACCuCuuCgUCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 163193 | 0.66 | 0.924166 |
Target: 5'- uGGCUUGGCUUC-UGccccucaGAGGAGCcGGGCa -3' miRNA: 3'- -CCGAGUCGAGGcAC-------CUCUUCGuCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 135122 | 0.66 | 0.924708 |
Target: 5'- gGGUUU-GCUCCGgcggGGGGuGGCcGGGCc -3' miRNA: 3'- -CCGAGuCGAGGCa---CCUCuUCGuCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 167489 | 0.66 | 0.924708 |
Target: 5'- aGGgUguGC-CUGgcgggGGAGAgggGGCAGGGCu -3' miRNA: 3'- -CCgAguCGaGGCa----CCUCU---UCGUCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 42671 | 0.66 | 0.924166 |
Target: 5'- cGGCUC-GC-CCGcGGuGGgcugccugaggcuGGCAGAGCc -3' miRNA: 3'- -CCGAGuCGaGGCaCCuCU-------------UCGUCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 168237 | 0.66 | 0.929997 |
Target: 5'- gGGC-CGGCgCCugcagGGGGGgccGGCGGGGCg -3' miRNA: 3'- -CCGaGUCGaGGca---CCUCU---UCGUCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 114258 | 0.66 | 0.929997 |
Target: 5'- gGGC-CAGCUCguaGUGGugccccagauaGGAAaCAGAGCc -3' miRNA: 3'- -CCGaGUCGAGg--CACC-----------UCUUcGUCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 170284 | 0.66 | 0.924708 |
Target: 5'- aGGgUguGC-CUGgcgggGGAGAgggGGCAGGGCu -3' miRNA: 3'- -CCgAguCGaGGCa----CCUCU---UCGUCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 138385 | 0.66 | 0.935047 |
Target: 5'- uGGCggGGCUCUcagugagauGUGGAGGAG--GAGCu -3' miRNA: 3'- -CCGagUCGAGG---------CACCUCUUCguCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 53370 | 0.66 | 0.929997 |
Target: 5'- cGGCccaGGCcCCGagGGAGAGGCGuGAGa -3' miRNA: 3'- -CCGag-UCGaGGCa-CCUCUUCGU-CUCg -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 49252 | 0.66 | 0.924708 |
Target: 5'- aGGCUgGauGCUCUGaggcGGAGAAG-GGGGCg -3' miRNA: 3'- -CCGAgU--CGAGGCa---CCUCUUCgUCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 116679 | 0.66 | 0.918615 |
Target: 5'- aGGCUCuGCUCCcgccccauccuGUacgaugcGGAGAccgGGCAGGuGCa -3' miRNA: 3'- -CCGAGuCGAGG-----------CA-------CCUCU---UCGUCU-CG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 168421 | 0.66 | 0.924708 |
Target: 5'- aGGgUguGC-CUGgcgggGGAGAgggGGCAGGGCu -3' miRNA: 3'- -CCgAguCGaGGCa----CCUCU---UCGUCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 167305 | 0.66 | 0.929997 |
Target: 5'- gGGC-CGGCgCCugcagGGGGGgccGGCGGGGCg -3' miRNA: 3'- -CCGaGUCGaGGca---CCUCU---UCGUCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 169353 | 0.66 | 0.924708 |
Target: 5'- aGGgUguGC-CUGgcgggGGAGAgggGGCAGGGCu -3' miRNA: 3'- -CCgAguCGaGGCa----CCUCU---UCGUCUCG- -5' |
|||||||
29128 | 3' | -55.5 | NC_006146.1 | + | 138331 | 0.66 | 0.918615 |
Target: 5'- aGCUaAGgUCCGcgagauuUGGGGuAGCGGAGCc -3' miRNA: 3'- cCGAgUCgAGGC-------ACCUCuUCGUCUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home