miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29128 3' -55.5 NC_006146.1 + 149459 1.14 0.001645
Target:  5'- cGGCUCAGCUCCGUGGAGAAGCAGAGCu -3'
miRNA:   3'- -CCGAGUCGAGGCACCUCUUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 95472 0.69 0.806059
Target:  5'- gGGCUCugagAGCUCCGggucaaacucgggGGAGAAGgCcuccauauccgGGAGCu -3'
miRNA:   3'- -CCGAG----UCGAGGCa------------CCUCUUC-G-----------UCUCG- -5'
29128 3' -55.5 NC_006146.1 + 52695 0.68 0.843293
Target:  5'- cGUcCAGCUCCGgGcGGGAGGUcagGGGGCg -3'
miRNA:   3'- cCGaGUCGAGGCaC-CUCUUCG---UCUCG- -5'
29128 3' -55.5 NC_006146.1 + 169728 0.66 0.939861
Target:  5'- cGCUCAGaUCgGcgcGGGGGAGCcccGGGGCg -3'
miRNA:   3'- cCGAGUCgAGgCa--CCUCUUCG---UCUCG- -5'
29128 3' -55.5 NC_006146.1 + 43354 0.72 0.644561
Target:  5'- aGGCgCAGC-CCGUGGcAGggGguG-GCu -3'
miRNA:   3'- -CCGaGUCGaGGCACC-UCuuCguCuCG- -5'
29128 3' -55.5 NC_006146.1 + 150062 0.72 0.664952
Target:  5'- cGGuCUCGGCga--UGGAGAGGCAGGGg -3'
miRNA:   3'- -CC-GAGUCGaggcACCUCUUCGUCUCg -5'
29128 3' -55.5 NC_006146.1 + 68242 0.71 0.685236
Target:  5'- aGCUgCAGUuccacgagagaUCCcgccacgcgGUGGAGggGCGGGGCg -3'
miRNA:   3'- cCGA-GUCG-----------AGG---------CACCUCuuCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 158621 0.71 0.705345
Target:  5'- uGGUUCAGCUgCCaGUaGGuGuAGCGGGGCu -3'
miRNA:   3'- -CCGAGUCGA-GG-CA-CCuCuUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 38531 0.7 0.744751
Target:  5'- aGGUUUAGg-CCGUGGAGAcGCAGGa- -3'
miRNA:   3'- -CCGAGUCgaGGCACCUCUuCGUCUcg -5'
29128 3' -55.5 NC_006146.1 + 62995 0.69 0.800731
Target:  5'- uGGCccUgGGCUCCG-GGAGucuGGCGGGuGCc -3'
miRNA:   3'- -CCG--AgUCGAGGCaCCUCu--UCGUCU-CG- -5'
29128 3' -55.5 NC_006146.1 + 68198 0.7 0.763901
Target:  5'- gGGCgcagCGGCUCCG-GGAGGu-CAGAcGCu -3'
miRNA:   3'- -CCGa---GUCGAGGCaCCUCUucGUCU-CG- -5'
29128 3' -55.5 NC_006146.1 + 96650 0.7 0.735024
Target:  5'- uGGC-CAGC-CCGgGGAGAcggccgcGCAGGGCc -3'
miRNA:   3'- -CCGaGUCGaGGCaCCUCUu------CGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 100230 0.78 0.338801
Target:  5'- aGUUCAGCUCCGUGGcaguGGggGCguucacgcacgGGGGCu -3'
miRNA:   3'- cCGAGUCGAGGCACC----UCuuCG-----------UCUCG- -5'
29128 3' -55.5 NC_006146.1 + 96805 0.7 0.773306
Target:  5'- aGCUCAGCUgCaggcuucccugGUGGGGAcgGGCGG-GCa -3'
miRNA:   3'- cCGAGUCGAgG-----------CACCUCU--UCGUCuCG- -5'
29128 3' -55.5 NC_006146.1 + 129646 0.75 0.484858
Target:  5'- cGgUCGGCUCCGUcuGGGGucuguaccaGAGCAGGGCc -3'
miRNA:   3'- cCgAGUCGAGGCA--CCUC---------UUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 54124 0.71 0.725208
Target:  5'- aGCgucugCAGgUCCGUGGAGuAGUAGcGGCc -3'
miRNA:   3'- cCGa----GUCgAGGCACCUCuUCGUC-UCG- -5'
29128 3' -55.5 NC_006146.1 + 142469 0.7 0.782585
Target:  5'- uGGUggGGCUcCCGUGGAGugaccCGGAGCc -3'
miRNA:   3'- -CCGagUCGA-GGCACCUCuuc--GUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 71796 0.69 0.830149
Target:  5'- gGGCUUguGGCUCCcgaUGGGGGAcugguugccacugauGUAGAGCc -3'
miRNA:   3'- -CCGAG--UCGAGGc--ACCUCUU---------------CGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 154877 0.73 0.593551
Target:  5'- aGGUagAGC-CCGUcGGGggGCAGGGCc -3'
miRNA:   3'- -CCGagUCGaGGCAcCUCuuCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 170101 0.72 0.664952
Target:  5'- gGGC-CGGCgCCGcagGGGGGgccGGCGGGGCg -3'
miRNA:   3'- -CCGaGUCGaGGCa--CCUCU---UCGUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.