miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29128 3' -55.5 NC_006146.1 + 7696 0.68 0.859033
Target:  5'- cGGCcugccCGGCUCCucuGAGggGCAGaAGCc -3'
miRNA:   3'- -CCGa----GUCGAGGcacCUCuuCGUC-UCG- -5'
29128 3' -55.5 NC_006146.1 + 10866 0.67 0.881098
Target:  5'- cGGCUCucaAGCcUUGcaUGGGGAgacAGCGGGGCg -3'
miRNA:   3'- -CCGAG---UCGaGGC--ACCUCU---UCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 11398 0.67 0.913417
Target:  5'- uGGUggAGCUgC-UGGAaAAGCAGAGCc -3'
miRNA:   3'- -CCGagUCGAgGcACCUcUUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 14625 0.67 0.913417
Target:  5'- uGCUgGcGCUgCGUGGGGGAGCucauGGuGCu -3'
miRNA:   3'- cCGAgU-CGAgGCACCUCUUCG----UCuCG- -5'
29128 3' -55.5 NC_006146.1 + 15437 0.67 0.913417
Target:  5'- cGGCUgCAGUcCUGccUGGcGcAGCAGAGCg -3'
miRNA:   3'- -CCGA-GUCGaGGC--ACCuCuUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 18297 0.7 0.773306
Target:  5'- --gUCAGCaCCGUGGGGggGCuGuuuAGCa -3'
miRNA:   3'- ccgAGUCGaGGCACCUCuuCGuC---UCG- -5'
29128 3' -55.5 NC_006146.1 + 18605 0.7 0.732088
Target:  5'- aGCUCAGCgggcgaccaaaccuUCgGUGGcc-AGCAGAGCa -3'
miRNA:   3'- cCGAGUCG--------------AGgCACCucuUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 32162 0.69 0.826789
Target:  5'- gGGCUCAGgcaaCCGUaaggagGGGGggGUAGGGg -3'
miRNA:   3'- -CCGAGUCga--GGCA------CCUCuuCGUCUCg -5'
29128 3' -55.5 NC_006146.1 + 34500 0.67 0.880393
Target:  5'- aGCUaAGgUCCGcgagauuUGGGGuAGGCGGAGCu -3'
miRNA:   3'- cCGAgUCgAGGC-------ACCUC-UUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 36212 0.74 0.533323
Target:  5'- gGGCUCcccgggAGCgcaagCCGgccggGGAgGAGGCAGGGCg -3'
miRNA:   3'- -CCGAG------UCGa----GGCa----CCU-CUUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 38531 0.7 0.744751
Target:  5'- aGGUUUAGg-CCGUGGAGAcGCAGGa- -3'
miRNA:   3'- -CCGAGUCgaGGCACCUCUuCGUCUcg -5'
29128 3' -55.5 NC_006146.1 + 39074 0.67 0.881098
Target:  5'- cGC-CGGcCUCCGgucUGGGGAAGgcCAGGGCc -3'
miRNA:   3'- cCGaGUC-GAGGC---ACCUCUUC--GUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 40656 0.69 0.835133
Target:  5'- uGGCcCGGUUCC-UGGAGAcugguGguGGGCu -3'
miRNA:   3'- -CCGaGUCGAGGcACCUCUu----CguCUCG- -5'
29128 3' -55.5 NC_006146.1 + 40865 0.68 0.843293
Target:  5'- aGGCcCGGCUCgCGguccGGAGAcggAGcCGGGGCc -3'
miRNA:   3'- -CCGaGUCGAG-GCa---CCUCU---UC-GUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 41023 0.66 0.929997
Target:  5'- gGGCgUCAGagCCGUGG-GAGG-AGGGCc -3'
miRNA:   3'- -CCG-AGUCgaGGCACCuCUUCgUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 42270 0.7 0.744751
Target:  5'- uGGCUCAGCUgggcgacaCCGgGGAGGccaGGUAGcccAGCg -3'
miRNA:   3'- -CCGAGUCGA--------GGCaCCUCU---UCGUC---UCG- -5'
29128 3' -55.5 NC_006146.1 + 42671 0.66 0.924166
Target:  5'- cGGCUC-GC-CCGcGGuGGgcugccugaggcuGGCAGAGCc -3'
miRNA:   3'- -CCGAGuCGaGGCaCCuCU-------------UCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 43180 0.67 0.881098
Target:  5'- gGGCccagccccaUCAGCUCCucgcGGGAGGCGGGGa -3'
miRNA:   3'- -CCG---------AGUCGAGGcac-CUCUUCGUCUCg -5'
29128 3' -55.5 NC_006146.1 + 43354 0.72 0.644561
Target:  5'- aGGCgCAGC-CCGUGGcAGggGguG-GCu -3'
miRNA:   3'- -CCGaGUCGaGGCACC-UCuuCguCuCG- -5'
29128 3' -55.5 NC_006146.1 + 44750 0.67 0.894714
Target:  5'- uGGCUCcaaucgGGCUCuCGggGGAGAGGguGccguGCc -3'
miRNA:   3'- -CCGAG------UCGAG-GCa-CCUCUUCguCu---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.