miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29128 3' -55.5 NC_006146.1 + 149459 1.14 0.001645
Target:  5'- cGGCUCAGCUCCGUGGAGAAGCAGAGCu -3'
miRNA:   3'- -CCGAGUCGAGGCACCUCUUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 76734 0.79 0.295456
Target:  5'- aGGCcgaCAGCUUCGUGGAGGcccacgGGCAcGAGCa -3'
miRNA:   3'- -CCGa--GUCGAGGCACCUCU------UCGU-CUCG- -5'
29128 3' -55.5 NC_006146.1 + 103592 0.78 0.331267
Target:  5'- gGGCUCAGCgcggaCGUGGcccgGGAgcuGGCGGAGCu -3'
miRNA:   3'- -CCGAGUCGag---GCACC----UCU---UCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 100230 0.78 0.338801
Target:  5'- aGUUCAGCUCCGUGGcaguGGggGCguucacgcacgGGGGCu -3'
miRNA:   3'- cCGAGUCGAGGCACC----UCuuCG-----------UCUCG- -5'
29128 3' -55.5 NC_006146.1 + 117595 0.77 0.37017
Target:  5'- gGGCUCGGaCUCCGgccagGGAGAGGaGGAGa -3'
miRNA:   3'- -CCGAGUC-GAGGCa----CCUCUUCgUCUCg -5'
29128 3' -55.5 NC_006146.1 + 66703 0.76 0.420811
Target:  5'- cGGCUugCGGCcCCGUGGGGgcGCAGAcgGCc -3'
miRNA:   3'- -CCGA--GUCGaGGCACCUCuuCGUCU--CG- -5'
29128 3' -55.5 NC_006146.1 + 129646 0.75 0.484858
Target:  5'- cGgUCGGCUCCGUcuGGGGucuguaccaGAGCAGGGCc -3'
miRNA:   3'- cCgAGUCGAGGCA--CCUC---------UUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 36212 0.74 0.533323
Target:  5'- gGGCUCcccgggAGCgcaagCCGgccggGGAgGAGGCAGGGCg -3'
miRNA:   3'- -CCGAG------UCGa----GGCa----CCU-CUUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 154877 0.73 0.593551
Target:  5'- aGGUagAGC-CCGUcGGGggGCAGGGCc -3'
miRNA:   3'- -CCGagUCGaGGCAcCUCuuCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 152316 0.72 0.631282
Target:  5'- uGGCUCauguguccagaccgGGaCUCUGggacuguagagGGAGAGGCAGGGCc -3'
miRNA:   3'- -CCGAG--------------UC-GAGGCa----------CCUCUUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 146160 0.72 0.631282
Target:  5'- uGGCUCauguguccagaccgGGaCUCUGggacuguagagGGAGAGGCAGGGCc -3'
miRNA:   3'- -CCGAG--------------UC-GAGGCa----------CCUCUUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 149238 0.72 0.631282
Target:  5'- uGGCUCauguguccagaccgGGaCUCUGggacuguagagGGAGAGGCAGGGCc -3'
miRNA:   3'- -CCGAG--------------UC-GAGGCa----------CCUCUUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 143082 0.72 0.631282
Target:  5'- uGGCUCauguguccagaccgGGaCUCUGggacuguagagGGAGAGGCAGGGCc -3'
miRNA:   3'- -CCGAG--------------UC-GAGGCa----------CCUCUUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 155394 0.72 0.631282
Target:  5'- uGGCUCauguguccagaccgGGaCUCUGggacuguagagGGAGAGGCAGGGCc -3'
miRNA:   3'- -CCGAG--------------UC-GAGGCa----------CCUCUUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 158473 0.72 0.631282
Target:  5'- uGGCUCauguguccagaccgGGaCUCUGggacuguagagGGAGAGGCAGGGCc -3'
miRNA:   3'- -CCGAG--------------UC-GAGGCa----------CCUCUUCGUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 62940 0.72 0.634348
Target:  5'- aGGCUguGC-CUGUGGAGGuuaGGGGCa -3'
miRNA:   3'- -CCGAguCGaGGCACCUCUucgUCUCG- -5'
29128 3' -55.5 NC_006146.1 + 72503 0.72 0.644561
Target:  5'- uGGCUgCAGCgcCUGcGGAGGAGCGGAcgGCu -3'
miRNA:   3'- -CCGA-GUCGa-GGCaCCUCUUCGUCU--CG- -5'
29128 3' -55.5 NC_006146.1 + 43354 0.72 0.644561
Target:  5'- aGGCgCAGC-CCGUGGcAGggGguG-GCu -3'
miRNA:   3'- -CCGaGUCGaGGCACC-UCuuCguCuCG- -5'
29128 3' -55.5 NC_006146.1 + 150062 0.72 0.664952
Target:  5'- cGGuCUCGGCga--UGGAGAGGCAGGGg -3'
miRNA:   3'- -CC-GAGUCGaggcACCUCUUCGUCUCg -5'
29128 3' -55.5 NC_006146.1 + 170101 0.72 0.664952
Target:  5'- gGGC-CGGCgCCGcagGGGGGgccGGCGGGGCg -3'
miRNA:   3'- -CCGaGUCGaGGCa--CCUCU---UCGUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.