miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29129 3' -59 NC_006146.1 + 23131 0.72 0.458925
Target:  5'- --cUGGGAGaGGCCGGGAGcCUGggCUUCg -3'
miRNA:   3'- cacAUCCUC-CCGGUCCUC-GACa-GGAG- -5'
29129 3' -59 NC_006146.1 + 144998 0.68 0.654808
Target:  5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3'
miRNA:   3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5'
29129 3' -59 NC_006146.1 + 141920 0.68 0.654808
Target:  5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3'
miRNA:   3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5'
29129 3' -59 NC_006146.1 + 27899 0.68 0.644719
Target:  5'- ----cGGAGGGgaCCGGGAGCUGcUCC-Ca -3'
miRNA:   3'- cacauCCUCCC--GGUCCUCGAC-AGGaG- -5'
29129 3' -59 NC_006146.1 + 49716 0.69 0.594282
Target:  5'- uUGcAGucGGGCCAGGAGCUGguugauUUCUCg -3'
miRNA:   3'- cACaUCcuCCCGGUCCUCGAC------AGGAG- -5'
29129 3' -59 NC_006146.1 + 88852 0.69 0.594282
Target:  5'- -gGUAGGgaaucggcGGGGCCuGGGGCUGUUgUg -3'
miRNA:   3'- caCAUCC--------UCCCGGuCCUCGACAGgAg -5'
29129 3' -59 NC_006146.1 + 123692 0.7 0.564285
Target:  5'- cGUGgcGGAGgcGGCCAGGGGcCUGgCgCUCg -3'
miRNA:   3'- -CACauCCUC--CCGGUCCUC-GACaG-GAG- -5'
29129 3' -59 NC_006146.1 + 74430 0.7 0.544507
Target:  5'- ---cAGGuGGGCCAGGA--UGUCCUUg -3'
miRNA:   3'- cacaUCCuCCCGGUCCUcgACAGGAG- -5'
29129 3' -59 NC_006146.1 + 41304 0.7 0.544507
Target:  5'- gGUGaGGGgcaGGGGCUuuuucagaGGGAGCUGUCCcuUCa -3'
miRNA:   3'- -CACaUCC---UCCCGG--------UCCUCGACAGG--AG- -5'
29129 3' -59 NC_006146.1 + 148076 0.68 0.654808
Target:  5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3'
miRNA:   3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5'
29129 3' -59 NC_006146.1 + 151154 0.68 0.654808
Target:  5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3'
miRNA:   3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5'
29129 3' -59 NC_006146.1 + 154232 0.68 0.654808
Target:  5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3'
miRNA:   3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5'
29129 3' -59 NC_006146.1 + 76395 0.66 0.762765
Target:  5'- ---gGGGAGGGaCCGGGGGCg--CCg- -3'
miRNA:   3'- cacaUCCUCCC-GGUCCUCGacaGGag -5'
29129 3' -59 NC_006146.1 + 42882 0.66 0.762765
Target:  5'- -gGUGGGAGGcGaagGGGGGCacGUCCUCc -3'
miRNA:   3'- caCAUCCUCC-Cgg-UCCUCGa-CAGGAG- -5'
29129 3' -59 NC_006146.1 + 139321 0.67 0.72447
Target:  5'- uGUGgauugAGGAGGGUCGGGA--UGUUCUg -3'
miRNA:   3'- -CACa----UCCUCCCGGUCCUcgACAGGAg -5'
29129 3' -59 NC_006146.1 + 123600 0.67 0.704823
Target:  5'- ---cAGGAGGcCCGGGAGgaGUCC-Cg -3'
miRNA:   3'- cacaUCCUCCcGGUCCUCgaCAGGaG- -5'
29129 3' -59 NC_006146.1 + 124523 0.68 0.683937
Target:  5'- cUGgcgAGGgacgGGGGCCuggGGGAGCUgcugucggacgcgGUCCUCa -3'
miRNA:   3'- cACa--UCC----UCCCGG---UCCUCGA-------------CAGGAG- -5'
29129 3' -59 NC_006146.1 + 37672 0.68 0.674925
Target:  5'- -gGUAGGGGGGCUGGGGGCa------ -3'
miRNA:   3'- caCAUCCUCCCGGUCCUCGacaggag -5'
29129 3' -59 NC_006146.1 + 88489 0.68 0.663873
Target:  5'- aUGUAuGGAgccaaugGGGCCuGGGGCUGUaUCUCc -3'
miRNA:   3'- cACAU-CCU-------CCCGGuCCUCGACA-GGAG- -5'
29129 3' -59 NC_006146.1 + 157310 0.68 0.654808
Target:  5'- cUGgacuGGAGGGCCcuGGGAGgcccCUGUCCg- -3'
miRNA:   3'- cACau--CCUCCCGG--UCCUC----GACAGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.