miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 67259 0.67 0.889265
Target:  5'- gGGGGAUaGGCGGGCcccuccUCCGCGUgCCAGcuuGCg -3'
miRNA:   3'- -CUCCUG-CCGUUUG------AGGUGCA-GGUC---CG- -5'
29131 3' -55.7 NC_006146.1 + 55169 0.67 0.889265
Target:  5'- cAGGGgGGUGA---CCGCGUCCcAGGCu -3'
miRNA:   3'- cUCCUgCCGUUugaGGUGCAGG-UCCG- -5'
29131 3' -55.7 NC_006146.1 + 103564 0.67 0.889265
Target:  5'- cGAGGAUgGGCucGCccgggCCugGgCCGGGCu -3'
miRNA:   3'- -CUCCUG-CCGuuUGa----GGugCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 52718 0.67 0.88242
Target:  5'- aGGGGGCGGCcggccagaAAGCUCU-UGaCCAGGUa -3'
miRNA:   3'- -CUCCUGCCG--------UUUGAGGuGCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 57072 0.67 0.88242
Target:  5'- gGAGGAagaCGGCGuaguccacgAGCggCGCGUCCuGGCc -3'
miRNA:   3'- -CUCCU---GCCGU---------UUGagGUGCAGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 62424 0.67 0.88242
Target:  5'- cGGGugGGCuGGCUgaaGCGgccUCCGGGCu -3'
miRNA:   3'- cUCCugCCGuUUGAgg-UGC---AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 159198 0.68 0.878207
Target:  5'- aGAGGACagaaguugguGGCAAAUaUCUGCGUggauaccguggggggCCAGGCu -3'
miRNA:   3'- -CUCCUG----------CCGUUUG-AGGUGCA---------------GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 100103 0.68 0.875356
Target:  5'- -cGGACGGUGGACaggagUCUGCGgucCCGGGUu -3'
miRNA:   3'- cuCCUGCCGUUUG-----AGGUGCa--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 30145 0.68 0.875356
Target:  5'- gGGGGugGGCAugg-CCACGcaUCCGagagcGGCa -3'
miRNA:   3'- -CUCCugCCGUuugaGGUGC--AGGU-----CCG- -5'
29131 3' -55.7 NC_006146.1 + 49471 0.68 0.875356
Target:  5'- cGGGAUGGUGAGggCCGCGgugucggCCAGGg -3'
miRNA:   3'- cUCCUGCCGUUUgaGGUGCa------GGUCCg -5'
29131 3' -55.7 NC_006146.1 + 54924 0.68 0.874637
Target:  5'- aGGGAcCGGCAGuaggcCUCgACGUCUgcccgcgGGGCg -3'
miRNA:   3'- cUCCU-GCCGUUu----GAGgUGCAGG-------UCCG- -5'
29131 3' -55.7 NC_006146.1 + 34167 0.68 0.871014
Target:  5'- aGGGugGGgggugcgcccccagcCGGAC-CCugGUgCCAGGCa -3'
miRNA:   3'- cUCCugCC---------------GUUUGaGGugCA-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 151457 0.68 0.868077
Target:  5'- cAGGACGaaGCGGcGCgCCGCGUCCAcguuGGCu -3'
miRNA:   3'- cUCCUGC--CGUU-UGaGGUGCAGGU----CCG- -5'
29131 3' -55.7 NC_006146.1 + 41758 0.68 0.868077
Target:  5'- cGGGugGGCuucccgccggAGGCcCUGCGcCCGGGCg -3'
miRNA:   3'- cUCCugCCG----------UUUGaGGUGCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 94912 0.68 0.867338
Target:  5'- uGGGugGGCGAGC-CCACGcagacgaUgCAGGg -3'
miRNA:   3'- cUCCugCCGUUUGaGGUGC-------AgGUCCg -5'
29131 3' -55.7 NC_006146.1 + 156927 0.68 0.86361
Target:  5'- uGGGuGGCGGCGcugacgGGCUCCGCuacgcugauaaaguuGUCCuGGGCu -3'
miRNA:   3'- -CUC-CUGCCGU------UUGAGGUG---------------CAGG-UCCG- -5'
29131 3' -55.7 NC_006146.1 + 8532 0.68 0.86059
Target:  5'- -cGGGCGcGCcaagGGGCUCCAUcUCCAaGGCg -3'
miRNA:   3'- cuCCUGC-CG----UUUGAGGUGcAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 33966 0.68 0.86059
Target:  5'- cGGGugGGCGuGgUCCGCuggguccgcugGUCCGGuGCa -3'
miRNA:   3'- cUCCugCCGUuUgAGGUG-----------CAGGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 73052 0.68 0.86059
Target:  5'- cGGGGuCGGCGGcccccucCUCCAgGUCguGGUa -3'
miRNA:   3'- -CUCCuGCCGUUu------GAGGUgCAGguCCG- -5'
29131 3' -55.7 NC_006146.1 + 157575 0.68 0.86059
Target:  5'- uAGGccGCGGCcGACUCCAcCGcCCuGGUg -3'
miRNA:   3'- cUCC--UGCCGuUUGAGGU-GCaGGuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.