miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 146025 0.7 0.784868
Target:  5'- cAGGGgGGCAGcuccuggcACUgCGCGUCCAGcuGCa -3'
miRNA:   3'- cUCCUgCCGUU--------UGAgGUGCAGGUC--CG- -5'
29131 3' -55.7 NC_006146.1 + 145006 0.68 0.852899
Target:  5'- aAGGugGGCAGGgaggagcuCUCCACcacaauGUucCCGGGCa -3'
miRNA:   3'- cUCCugCCGUUU--------GAGGUG------CA--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 144422 0.66 0.94051
Target:  5'- aGAGGGCaccuacucgaGGCAGGCuuacaugggagUCUAUGguaagCCAGGCc -3'
miRNA:   3'- -CUCCUG----------CCGUUUG-----------AGGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 141744 0.73 0.617317
Target:  5'- aGGGACGGUgcaccgggaAGGCUCaGCGucUCCAGGCu -3'
miRNA:   3'- cUCCUGCCG---------UUUGAGgUGC--AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 141344 0.66 0.94051
Target:  5'- aGAGGGCaccuacucgaGGCAGGCuuacaugggagUCUAUGguaagCCAGGCc -3'
miRNA:   3'- -CUCCUG----------CCGUUUG-----------AGGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 140546 0.66 0.930764
Target:  5'- aGGGACGGC--ACcCCAauuCGUCaUAGGCu -3'
miRNA:   3'- cUCCUGCCGuuUGaGGU---GCAG-GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 137996 0.7 0.751176
Target:  5'- cGGGGugGGgggugcgcccccagcCGGAC-CCugGUgCCAGGCa -3'
miRNA:   3'- -CUCCugCC---------------GUUUGaGGugCA-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 132622 0.73 0.607167
Target:  5'- aAGGGcCGGCAGuguggcccGCUCCAgaUGuUCCAGGCa -3'
miRNA:   3'- cUCCU-GCCGUU--------UGAGGU--GC-AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 130128 0.7 0.746381
Target:  5'- cAGGAUgauggaguucuugGGCAGG-UCCACGUCCGuGGCc -3'
miRNA:   3'- cUCCUG-------------CCGUUUgAGGUGCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 128953 0.66 0.935754
Target:  5'- --uGAUGGCAAaguagcGCUCCACGggccUCGGGUu -3'
miRNA:   3'- cucCUGCCGUU------UGAGGUGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 128822 0.71 0.68523
Target:  5'- aAGGACGGCGcGgUCCAggagcagguaagccCGgCCAGGCa -3'
miRNA:   3'- cUCCUGCCGUuUgAGGU--------------GCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 128741 0.66 0.925537
Target:  5'- gGAGGGgGGUGAG-UCCGUG-CCAGGCc -3'
miRNA:   3'- -CUCCUgCCGUUUgAGGUGCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 128188 0.7 0.784868
Target:  5'- gGAGG-CGGCccagggGGGCgCCGCGgcgCCGGGCc -3'
miRNA:   3'- -CUCCuGCCG------UUUGaGGUGCa--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 127624 0.72 0.657954
Target:  5'- -uGGGCGGCAccgccGGC-CCGCugccucuuGUCCAGGCc -3'
miRNA:   3'- cuCCUGCCGU-----UUGaGGUG--------CAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 127582 0.69 0.820229
Target:  5'- -uGGGCGGCcGAggCCGCGccggCCGGGUg -3'
miRNA:   3'- cuCCUGCCGuUUgaGGUGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 127156 0.71 0.71812
Target:  5'- -uGGACGGCGucauGCgcgaccaCCugGcCCGGGCg -3'
miRNA:   3'- cuCCUGCCGUu---UGa------GGugCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 126944 0.66 0.920075
Target:  5'- cAGGAUGGCGcuCUCCgggcGCGUCUGGa- -3'
miRNA:   3'- cUCCUGCCGUuuGAGG----UGCAGGUCcg -5'
29131 3' -55.7 NC_006146.1 + 126013 0.68 0.852899
Target:  5'- uGGGGGCGGUggGCUUCugcugCUGGGCc -3'
miRNA:   3'- -CUCCUGCCGuuUGAGGugca-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 125364 0.69 0.811622
Target:  5'- cAGGGCGGcCAAGC-CCAaggagGcCCAGGCc -3'
miRNA:   3'- cUCCUGCC-GUUUGaGGUg----CaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 123481 0.69 0.809008
Target:  5'- -uGGACGGCAuggaggAGCUgaggcuggcccuggCCACGgucgaccCCAGGCg -3'
miRNA:   3'- cuCCUGCCGU------UUGA--------------GGUGCa------GGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.