miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 123029 0.71 0.727945
Target:  5'- cGAGGccgaGGC-GGC-CCAgGUCCGGGCg -3'
miRNA:   3'- -CUCCug--CCGuUUGaGGUgCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 122772 0.66 0.92338
Target:  5'- cGGGGGCuGGcCGAACUCCAagagaagagaCGGGCg -3'
miRNA:   3'- -CUCCUG-CC-GUUUGAGGUgcag------GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 122652 0.73 0.597034
Target:  5'- cAGGACGGCGGcgggggccCUCCGCGcggcgcucacCCAGGCg -3'
miRNA:   3'- cUCCUGCCGUUu-------GAGGUGCa---------GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 122490 0.7 0.783954
Target:  5'- cGGGGACGGCGgcggggucgagagAAUggaggCCGCGgagcCCGGGUg -3'
miRNA:   3'- -CUCCUGCCGU-------------UUGa----GGUGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 120643 0.75 0.507755
Target:  5'- cAGGACGGCcuGAACgugUCCugGUUCAaGGCa -3'
miRNA:   3'- cUCCUGCCG--UUUG---AGGugCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 118063 0.72 0.627479
Target:  5'- cGGGGGCGGCGGcggcucggccCUCCGCaUCCuGGGCa -3'
miRNA:   3'- -CUCCUGCCGUUu---------GAGGUGcAGG-UCCG- -5'
29131 3' -55.7 NC_006146.1 + 117772 0.68 0.852119
Target:  5'- aGAGGA-GGCAAccgucgcGCUCCccCGggCCGGGCc -3'
miRNA:   3'- -CUCCUgCCGUU-------UGAGGu-GCa-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 117195 0.72 0.627479
Target:  5'- aGAGGACGGgGAACgugcCCcCG-CUAGGCg -3'
miRNA:   3'- -CUCCUGCCgUUUGa---GGuGCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 116756 0.69 0.818521
Target:  5'- gGAGGAgGGCAGgggggccgcuacuACUCCACGgaCCugcagacgcucaaGGGCg -3'
miRNA:   3'- -CUCCUgCCGUU-------------UGAGGUGCa-GG-------------UCCG- -5'
29131 3' -55.7 NC_006146.1 + 116058 0.67 0.908445
Target:  5'- uGGGGAUGGCGcauGACaaauguggCgACGUCCuGGUg -3'
miRNA:   3'- -CUCCUGCCGU---UUGa-------GgUGCAGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 115059 0.69 0.793932
Target:  5'- aGGGGAagggGGCGAACauUCCGCccacCCAGGCc -3'
miRNA:   3'- -CUCCUg---CCGUUUG--AGGUGca--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 114690 0.7 0.784868
Target:  5'- -uGGACGGCucGCggcucgUCCGCGagacCCGGGCc -3'
miRNA:   3'- cuCCUGCCGuuUG------AGGUGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 114655 0.66 0.94051
Target:  5'- cGAGGACGGCcccgcCUCCGCccCCGcGGa -3'
miRNA:   3'- -CUCCUGCCGuuu--GAGGUGcaGGU-CCg -5'
29131 3' -55.7 NC_006146.1 + 114616 0.67 0.90228
Target:  5'- cGAGG-CGGC--GCUggACGUCCuGGCc -3'
miRNA:   3'- -CUCCuGCCGuuUGAggUGCAGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 114307 0.72 0.637644
Target:  5'- cGAGGagaccgGCGGCGGGCUCgGCG-CCcGGCc -3'
miRNA:   3'- -CUCC------UGCCGUUUGAGgUGCaGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 114133 0.71 0.69826
Target:  5'- cGAGGA-GGCcugcgcguGCUCCGCGaUCAGGCc -3'
miRNA:   3'- -CUCCUgCCGuu------UGAGGUGCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 113970 0.66 0.94051
Target:  5'- aGAGGGgGGUgcccggGGGCUCCGCGUUguugaaggagCuGGCg -3'
miRNA:   3'- -CUCCUgCCG------UUUGAGGUGCAG----------GuCCG- -5'
29131 3' -55.7 NC_006146.1 + 110847 0.68 0.836931
Target:  5'- cGAGG-CGGCGcccgaucagaggGACgCUGCGUCuCGGGCu -3'
miRNA:   3'- -CUCCuGCCGU------------UUGaGGUGCAG-GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 109400 0.66 0.920075
Target:  5'- cAGGGCGGCAGGggcCUCCuCGgagcCCuGGUg -3'
miRNA:   3'- cUCCUGCCGUUU---GAGGuGCa---GGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 108691 0.67 0.90228
Target:  5'- aGAGGcuGCGGCGcagggcuuuuAGCUUCugGcUCCguGGGCg -3'
miRNA:   3'- -CUCC--UGCCGU----------UUGAGGugC-AGG--UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.