miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29134 3' -48.7 NC_006146.1 + 170356 0.66 0.999467
Target:  5'- -cACgugUGGAGgcccgCggAGAGGCCGUGUg -3'
miRNA:   3'- caUGa--ACCUUaa---GagUUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 170061 0.66 0.998997
Target:  5'- -----gGGAGggC-CcGGGGCCGCGCg -3'
miRNA:   3'- caugaaCCUUaaGaGuUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 169425 0.66 0.999467
Target:  5'- -cACgugUGGAGgcccgCggAGAGGCCGUGUg -3'
miRNA:   3'- caUGa--ACCUUaa---GagUUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 169129 0.66 0.998997
Target:  5'- -----gGGAGggC-CcGGGGCCGCGCg -3'
miRNA:   3'- caugaaCCUUaaGaGuUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 168493 0.66 0.999467
Target:  5'- -cACgugUGGAGgcccgCggAGAGGCCGUGUg -3'
miRNA:   3'- caUGa--ACCUUaa---GagUUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 168197 0.66 0.998997
Target:  5'- -----gGGAGggC-CcGGGGCCGCGCg -3'
miRNA:   3'- caugaaCCUUaaGaGuUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 168148 0.7 0.983118
Target:  5'- -gGCUUGGGccug-CGAGGGCCGgGUa -3'
miRNA:   3'- caUGAACCUuaagaGUUUCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 167561 0.66 0.999467
Target:  5'- -cACgugUGGAGgcccgCggAGAGGCCGUGUg -3'
miRNA:   3'- caUGa--ACCUUaa---GagUUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 167265 0.66 0.998997
Target:  5'- -----gGGAGggC-CcGGGGCCGCGCg -3'
miRNA:   3'- caugaaCCUUaaGaGuUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 159851 0.7 0.978718
Target:  5'- -gGCgggUGGGugGUuagaaaugcUUUCAGAGGUCGCGCg -3'
miRNA:   3'- caUGa--ACCU--UA---------AGAGUUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 159366 0.67 0.996905
Target:  5'- -gGCggGGGcgUagcugaccgccagCUCGcAGGCCGCGCu -3'
miRNA:   3'- caUGaaCCUuaA-------------GAGUuUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 158301 0.66 0.998776
Target:  5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3'
miRNA:   3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 157984 0.67 0.996957
Target:  5'- -gGCggUGGAcuugaugaagcuGUUCUgGAGGGCgGCGUu -3'
miRNA:   3'- caUGa-ACCU------------UAAGAgUUUCCGgCGCG- -5'
29134 3' -48.7 NC_006146.1 + 157341 0.69 0.98982
Target:  5'- -cGCgaGGGAgagUCUCu--GGCCGgGCg -3'
miRNA:   3'- caUGaaCCUUa--AGAGuuuCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 155699 0.68 0.995052
Target:  5'- gGUACUgcGggUUCgaggUGAAggcGGCCGCGCa -3'
miRNA:   3'- -CAUGAacCuuAAGa---GUUU---CCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 155298 1.12 0.01049
Target:  5'- uGUACUUGGAAUUCUCAAAGGCCGCGCc -3'
miRNA:   3'- -CAUGAACCUUAAGAGUUUCCGGCGCG- -5'
29134 3' -48.7 NC_006146.1 + 155222 0.66 0.998776
Target:  5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3'
miRNA:   3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 154263 0.69 0.98982
Target:  5'- -cGCgaGGGAgagUCUCu--GGCCGgGCg -3'
miRNA:   3'- caUGaaCCUUa--AGAGuuuCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 152220 0.66 0.998728
Target:  5'- gGUAUcUGGAucgugauagcgUCgccugCGAAGGCCGgGCa -3'
miRNA:   3'- -CAUGaACCUua---------AGa----GUUUCCGGCgCG- -5'
29134 3' -48.7 NC_006146.1 + 152144 0.66 0.998776
Target:  5'- -gGCUguGAGgcCUCGAGGGCCGgGUu -3'
miRNA:   3'- caUGAacCUUaaGAGUUUCCGGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.