Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29134 | 5' | -63.1 | NC_006146.1 | + | 262 | 0.66 | 0.633827 |
Target: 5'- uGCGCGCCcacCCgugagggggagCCCGGGaaGACCCGGg -3' miRNA: 3'- -UGCGCGGacaGGa----------GGGUCC--CUGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 554 | 0.66 | 0.643497 |
Target: 5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3' miRNA: 3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 908 | 0.71 | 0.329895 |
Target: 5'- cGCGCGCCg--CC-CCCcGGGACCCc- -3' miRNA: 3'- -UGCGCGGacaGGaGGGuCCCUGGGcu -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 934 | 0.68 | 0.519456 |
Target: 5'- cGCGCGCCgg-CCUCCCGu---CCCGAa -3' miRNA: 3'- -UGCGCGGacaGGAGGGUcccuGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 1134 | 0.68 | 0.501075 |
Target: 5'- cACGCGCCgGUgCC-CCCgcgAGGGucCCCGGg -3' miRNA: 3'- -UGCGCGGaCA-GGaGGG---UCCCu-GGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 1485 | 0.66 | 0.643497 |
Target: 5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3' miRNA: 3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 1840 | 0.71 | 0.329895 |
Target: 5'- cGCGCGCCg--CC-CCCcGGGACCCc- -3' miRNA: 3'- -UGCGCGGacaGGaGGGuCCCUGGGcu -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 1866 | 0.68 | 0.519456 |
Target: 5'- cGCGCGCCgg-CCUCCCGu---CCCGAa -3' miRNA: 3'- -UGCGCGGacaGGAGGGUcccuGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 2066 | 0.68 | 0.501075 |
Target: 5'- cACGCGCCgGUgCC-CCCgcgAGGGucCCCGGg -3' miRNA: 3'- -UGCGCGGaCA-GGaGGG---UCCCu-GGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 2417 | 0.66 | 0.643497 |
Target: 5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3' miRNA: 3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 2772 | 0.71 | 0.329895 |
Target: 5'- cGCGCGCCg--CC-CCCcGGGACCCc- -3' miRNA: 3'- -UGCGCGGacaGGaGGGuCCCUGGGcu -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 2798 | 0.68 | 0.519456 |
Target: 5'- cGCGCGCCgg-CCUCCCGu---CCCGAa -3' miRNA: 3'- -UGCGCGGacaGGAGGGUcccuGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 2998 | 0.68 | 0.501075 |
Target: 5'- cACGCGCCgGUgCC-CCCgcgAGGGucCCCGGg -3' miRNA: 3'- -UGCGCGGaCA-GGaGGG---UCCCu-GGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 3349 | 0.66 | 0.643497 |
Target: 5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3' miRNA: 3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 3704 | 0.71 | 0.329895 |
Target: 5'- cGCGCGCCg--CC-CCCcGGGACCCc- -3' miRNA: 3'- -UGCGCGGacaGGaGGGuCCCUGGGcu -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 3730 | 0.68 | 0.519456 |
Target: 5'- cGCGCGCCgg-CCUCCCGu---CCCGAa -3' miRNA: 3'- -UGCGCGGacaGGAGGGUcccuGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 4941 | 0.68 | 0.482987 |
Target: 5'- cCGUGCuCUGUgC-CCCGGGGACCaGGg -3' miRNA: 3'- uGCGCG-GACAgGaGGGUCCCUGGgCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 9464 | 0.66 | 0.624157 |
Target: 5'- cACGCGCCuUGggUUCCCGcGGGGCCa-- -3' miRNA: 3'- -UGCGCGG-ACagGAGGGU-CCCUGGgcu -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 9793 | 0.73 | 0.270922 |
Target: 5'- -aGCGUCUGcUCCUCuCCAGGG-CCCa- -3' miRNA: 3'- ugCGCGGAC-AGGAG-GGUCCCuGGGcu -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 14059 | 0.66 | 0.643497 |
Target: 5'- -aGCGCCggcuggcugcgGUCCUCCCGGGu-CUgGAg -3' miRNA: 3'- ugCGCGGa----------CAGGAGGGUCCcuGGgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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