miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29136 3' -65.8 NC_006146.1 + 78776 0.66 0.50996
Target:  5'- nGCccCCCAGCAGCagccCCAggccGGGCCCGc -3'
miRNA:   3'- uCGccGGGUCGUCGa---GGU----CCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 147924 0.66 0.500897
Target:  5'- aGGCGGCUCucccgGGCUgCCGGGGUCCc- -3'
miRNA:   3'- -UCGCCGGGucg--UCGA-GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 144846 0.66 0.500897
Target:  5'- aGGCGGCUCucccgGGCUgCCGGGGUCCc- -3'
miRNA:   3'- -UCGCCGGGucg--UCGA-GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 141768 0.66 0.500897
Target:  5'- aGGCGGCUCucccgGGCUgCCGGGGUCCc- -3'
miRNA:   3'- -UCGCCGGGucg--UCGA-GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 41054 0.66 0.500897
Target:  5'- cGGCGGCCCuGGgGGCcUCGGGGUggaGGg -3'
miRNA:   3'- -UCGCCGGG-UCgUCGaGGUCCCGgg-CC- -5'
29136 3' -65.8 NC_006146.1 + 115133 0.66 0.500897
Target:  5'- uGGUGGCCUcGCuGC-CCcuGGCCCGc -3'
miRNA:   3'- -UCGCCGGGuCGuCGaGGucCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 136739 0.66 0.495494
Target:  5'- uGGgGGCgCAccccccacccucgccGgGGCUCCGGgaGGCCCGGc -3'
miRNA:   3'- -UCgCCGgGU---------------CgUCGAGGUC--CCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 60508 0.66 0.491907
Target:  5'- cGaCGGCgaGGguGCUCCcacuGGGCCCa- -3'
miRNA:   3'- uC-GCCGggUCguCGAGGu---CCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 39669 0.66 0.482104
Target:  5'- -uUGGCCUuggaggcGGCgGGCUCCuGGGCCUGc -3'
miRNA:   3'- ucGCCGGG-------UCG-UCGAGGuCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 151002 0.66 0.500897
Target:  5'- aGGCGGCUCucccgGGCUgCCGGGGUCCc- -3'
miRNA:   3'- -UCGCCGGGucg--UCGA-GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 154080 0.66 0.500897
Target:  5'- aGGCGGCUCucccgGGCUgCCGGGGUCCc- -3'
miRNA:   3'- -UCGCCGGGucg--UCGA-GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 157158 0.66 0.500897
Target:  5'- aGGCGGCUCucccgGGCUgCCGGGGUCCc- -3'
miRNA:   3'- -UCGCCGGGucg--UCGA-GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 158410 0.66 0.50996
Target:  5'- gAGCGGCUgGGauggggaAGCcggagUCCagaGGGGCCCGa -3'
miRNA:   3'- -UCGCCGGgUCg------UCG-----AGG---UCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 155331 0.66 0.50996
Target:  5'- gAGCGGCUgGGauggggaAGCcggagUCCagaGGGGCCCGa -3'
miRNA:   3'- -UCGCCGGgUCg------UCG-----AGG---UCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 152253 0.66 0.50996
Target:  5'- gAGCGGCUgGGauggggaAGCcggagUCCagaGGGGCCCGa -3'
miRNA:   3'- -UCGCCGGgUCg------UCG-----AGG---UCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 149175 0.66 0.50996
Target:  5'- gAGCGGCUgGGauggggaAGCcggagUCCagaGGGGCCCGa -3'
miRNA:   3'- -UCGCCGGgUCg------UCG-----AGG---UCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 146097 0.66 0.50996
Target:  5'- gAGCGGCUgGGauggggaAGCcggagUCCagaGGGGCCCGa -3'
miRNA:   3'- -UCGCCGGgUCg------UCG-----AGG---UCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 143019 0.66 0.50996
Target:  5'- gAGCGGCUgGGauggggaAGCcggagUCCagaGGGGCCCGa -3'
miRNA:   3'- -UCGCCGGgUCg------UCG-----AGG---UCCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 100693 0.66 0.50996
Target:  5'- cGCGGCCCucGGCAcccggcGCUgCGGGGgUgGGu -3'
miRNA:   3'- uCGCCGGG--UCGU------CGAgGUCCCgGgCC- -5'
29136 3' -65.8 NC_006146.1 + 15428 0.66 0.500897
Target:  5'- gGGCuGGCCCGGCuGCagUCCu--GCCUGGc -3'
miRNA:   3'- -UCG-CCGGGUCGuCG--AGGuccCGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.