miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29136 3' -65.8 NC_006146.1 + 156355 1.08 0.000475
Target:  5'- aAGCGGCCCAGCAGCUCCAGGGCCCGGu -3'
miRNA:   3'- -UCGCCGGGUCGUCGAGGUCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 170437 0.75 0.126158
Target:  5'- cGgGGCCCGGC-GCgugCCGGGGgaCCCGGg -3'
miRNA:   3'- uCgCCGGGUCGuCGa--GGUCCC--GGGCC- -5'
29136 3' -65.8 NC_006146.1 + 113749 0.74 0.164359
Target:  5'- uAGCGGCCCGuCccgUCCGGGGCUCGGg -3'
miRNA:   3'- -UCGCCGGGUcGucgAGGUCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 78776 0.66 0.50996
Target:  5'- nGCccCCCAGCAGCagccCCAggccGGGCCCGc -3'
miRNA:   3'- uCGccGGGUCGUCGa---GGU----CCCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 47013 0.77 0.091669
Target:  5'- cAGCGGCCCGGuCGGaCUCgCGGGcGCCCuGGg -3'
miRNA:   3'- -UCGCCGGGUC-GUC-GAG-GUCC-CGGG-CC- -5'
29136 3' -65.8 NC_006146.1 + 44741 0.77 0.096085
Target:  5'- cGGUGGCCgCgGGCGGCUgugguugUCGGGGCCCGGc -3'
miRNA:   3'- -UCGCCGG-G-UCGUCGA-------GGUCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 137970 0.77 0.1012
Target:  5'- cGCGGCCgGGC--CUCCcgGGGGCCCGGc -3'
miRNA:   3'- uCGCCGGgUCGucGAGG--UCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 167365 0.76 0.119576
Target:  5'- cGGCGGCgCCGGCcgggggcugagggGGCUCCcgagggcggggccGGGGCCUGGc -3'
miRNA:   3'- -UCGCCG-GGUCG-------------UCGAGG-------------UCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 170160 0.76 0.119576
Target:  5'- cGGCGGCgCCGGCcgggggcugagggGGCUCCcgagggcggggccGGGGCCUGGc -3'
miRNA:   3'- -UCGCCG-GGUCG-------------UCGAGG-------------UCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 169506 0.75 0.126158
Target:  5'- cGgGGCCCGGC-GCgugCCGGGGgaCCCGGg -3'
miRNA:   3'- uCgCCGGGUCGuCGa--GGUCCC--GGGCC- -5'
29136 3' -65.8 NC_006146.1 + 155143 0.75 0.123126
Target:  5'- cGCGGCgucgCAGCAGCgggCCAGGGCCaCGu -3'
miRNA:   3'- uCGCCGg---GUCGUCGa--GGUCCCGG-GCc -5'
29136 3' -65.8 NC_006146.1 + 169229 0.76 0.119576
Target:  5'- cGGCGGCgCCGGCcgggggcugagggGGCUCCcgagggcggggccGGGGCCUGGc -3'
miRNA:   3'- -UCGCCG-GGUCG-------------UCGAGG-------------UCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 33332 0.82 0.045333
Target:  5'- cGgGGUCCGGguGCUCCGGGGCagCCGGg -3'
miRNA:   3'- uCgCCGGGUCguCGAGGUCCCG--GGCC- -5'
29136 3' -65.8 NC_006146.1 + 54041 0.75 0.123126
Target:  5'- gGGCGGCCauguCGGCGGUggUCAGGGCCCa- -3'
miRNA:   3'- -UCGCCGG----GUCGUCGa-GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 33083 0.8 0.062999
Target:  5'- uGGCucGGCCCuGCGGCUCUGGGGCagCCGGg -3'
miRNA:   3'- -UCG--CCGGGuCGUCGAGGUCCCG--GGCC- -5'
29136 3' -65.8 NC_006146.1 + 168297 0.76 0.119576
Target:  5'- cGGCGGCgCCGGCcgggggcugagggGGCUCCcgagggcggggccGGGGCCUGGc -3'
miRNA:   3'- -UCGCCG-GGUCG-------------UCGAGG-------------UCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 168574 0.75 0.126158
Target:  5'- cGgGGCCCGGC-GCgugCCGGGGgaCCCGGg -3'
miRNA:   3'- uCgCCGGGUCGuCGa--GGUCCC--GGGCC- -5'
29136 3' -65.8 NC_006146.1 + 47655 0.75 0.132432
Target:  5'- cGCGGCCCGGCccAGCgcggcggCCAGGGUCUcguGGa -3'
miRNA:   3'- uCGCCGGGUCG--UCGa------GGUCCCGGG---CC- -5'
29136 3' -65.8 NC_006146.1 + 167642 0.79 0.069665
Target:  5'- cGgGGCCCGGC-GCgugCCgGGGGCCCGGg -3'
miRNA:   3'- uCgCCGGGUCGuCGa--GG-UCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 55258 0.77 0.096323
Target:  5'- gGGCGGCCCgggcgaAGCGGCUCgUGGGGCUCGcGg -3'
miRNA:   3'- -UCGCCGGG------UCGUCGAG-GUCCCGGGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.