miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29136 3' -65.8 NC_006146.1 + 4441 0.66 0.500897
Target:  5'- aAGCGGCCUcGU-GCUCuCGGGGCaCGa -3'
miRNA:   3'- -UCGCCGGGuCGuCGAG-GUCCCGgGCc -5'
29136 3' -65.8 NC_006146.1 + 4935 0.66 0.474155
Target:  5'- gGGUGGCCguGCucuguGCcCCGGGGaCCaGGg -3'
miRNA:   3'- -UCGCCGGguCGu----CGaGGUCCC-GGgCC- -5'
29136 3' -65.8 NC_006146.1 + 9365 0.68 0.39862
Target:  5'- cGCaGGUCacaGGCAGCUgCCAGGGUuuGu -3'
miRNA:   3'- uCG-CCGGg--UCGUCGA-GGUCCCGggCc -5'
29136 3' -65.8 NC_006146.1 + 11870 0.68 0.360123
Target:  5'- gGGCgGGCCCgacguugacuGGCAcCaaCGGGGCCCGGc -3'
miRNA:   3'- -UCG-CCGGG----------UCGUcGagGUCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 12718 0.67 0.431254
Target:  5'- cGCGGCCauuggggcCAGCaagcgagaccAGC-CCAGaGGCCCGa -3'
miRNA:   3'- uCGCCGG--------GUCG----------UCGaGGUC-CCGGGCc -5'
29136 3' -65.8 NC_006146.1 + 12874 0.67 0.40663
Target:  5'- gGGUGGCUgGGCAGg-CCGGGuCUCGGg -3'
miRNA:   3'- -UCGCCGGgUCGUCgaGGUCCcGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 12953 0.7 0.283029
Target:  5'- cGGUGGCCUuggGGUAGCUCUggagucagagagucGGccuaGGCCCGGg -3'
miRNA:   3'- -UCGCCGGG---UCGUCGAGG--------------UC----CCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 13057 0.66 0.474155
Target:  5'- aGGCGGCgCUcGguGCccguccccUCCGGGGCCagcgCGGa -3'
miRNA:   3'- -UCGCCG-GGuCguCG--------AGGUCCCGG----GCC- -5'
29136 3' -65.8 NC_006146.1 + 13111 0.68 0.39862
Target:  5'- -cUGGCCCuguuuguggacGGgGGCUCCcGGGCCCa- -3'
miRNA:   3'- ucGCCGGG-----------UCgUCGAGGuCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 13185 0.7 0.304107
Target:  5'- cGGCcuGCCCGGCcucGCUCCGGGcGCCuccuCGGg -3'
miRNA:   3'- -UCGc-CGGGUCGu--CGAGGUCC-CGG----GCC- -5'
29136 3' -65.8 NC_006146.1 + 13369 0.68 0.375207
Target:  5'- gAGCcGCCCucGgGGC-CCAGGGCCCc- -3'
miRNA:   3'- -UCGcCGGGu-CgUCGaGGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 13395 0.66 0.50996
Target:  5'- cGCGGCCaCGGaCuGCcucagCCAGGucugcaaggcccGCCCGGu -3'
miRNA:   3'- uCGCCGG-GUC-GuCGa----GGUCC------------CGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 13583 0.67 0.448147
Target:  5'- cGCGGa-CAGgGGCcucCCAGGGCCCu- -3'
miRNA:   3'- uCGCCggGUCgUCGa--GGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 14351 0.69 0.331244
Target:  5'- uGCGGCCCuGCuGGUggggUCGGGuCCCGGg -3'
miRNA:   3'- uCGCCGGGuCG-UCGa---GGUCCcGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 14364 0.69 0.317457
Target:  5'- uGGCgGGCCuguCAGaCAGCccugUCUAGGGCCgGGa -3'
miRNA:   3'- -UCG-CCGG---GUC-GUCG----AGGUCCCGGgCC- -5'
29136 3' -65.8 NC_006146.1 + 14811 0.68 0.375207
Target:  5'- aGGcCGGCCgGGCcggaggagGGCacggUCUcGGGCCCGGg -3'
miRNA:   3'- -UC-GCCGGgUCG--------UCG----AGGuCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 15108 0.67 0.41474
Target:  5'- cGGUGGCCCccagggccaccgAGCGGCUCUucugcggcGGGGUCUa- -3'
miRNA:   3'- -UCGCCGGG------------UCGUCGAGG--------UCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 15261 0.72 0.227782
Target:  5'- aAGCGGUCCaccaguaagGGUAGguaacuucacCUCCAGGGCCCa- -3'
miRNA:   3'- -UCGCCGGG---------UCGUC----------GAGGUCCCGGGcc -5'
29136 3' -65.8 NC_006146.1 + 15428 0.66 0.500897
Target:  5'- gGGCuGGCCCGGCuGCagUCCu--GCCUGGc -3'
miRNA:   3'- -UCG-CCGGGUCGuCG--AGGuccCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 15797 0.67 0.431254
Target:  5'- cGCGGCCauuggggcCAGCaagcgagaccAGC-CCAGaGGCCCGa -3'
miRNA:   3'- uCGCCGG--------GUCG----------UCGaGGUC-CCGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.