miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29136 3' -65.8 NC_006146.1 + 156355 1.08 0.000475
Target:  5'- aAGCGGCCCAGCAGCUCCAGGGCCCGGu -3'
miRNA:   3'- -UCGCCGGGUCGUCGAGGUCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 33332 0.82 0.045333
Target:  5'- cGgGGUCCGGguGCUCCGGGGCagCCGGg -3'
miRNA:   3'- uCgCCGGGUCguCGAGGUCCCG--GGCC- -5'
29136 3' -65.8 NC_006146.1 + 61922 0.81 0.052789
Target:  5'- cGGCgGGCCauCAGgGGCUCCAGGGCCCuGGu -3'
miRNA:   3'- -UCG-CCGG--GUCgUCGAGGUCCCGGG-CC- -5'
29136 3' -65.8 NC_006146.1 + 33160 0.8 0.05553
Target:  5'- gAGCGGaccCCCAGgAGCUCCAGaaccggguaGGCCCGGg -3'
miRNA:   3'- -UCGCC---GGGUCgUCGAGGUC---------CCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 33083 0.8 0.062999
Target:  5'- uGGCucGGCCCuGCGGCUCUGGGGCagCCGGg -3'
miRNA:   3'- -UCG--CCGGGuCGUCGAGGUCCCG--GGCC- -5'
29136 3' -65.8 NC_006146.1 + 24366 0.79 0.067938
Target:  5'- uAGUGGCgCAGggcCAGCUCCAGGGCgCGGc -3'
miRNA:   3'- -UCGCCGgGUC---GUCGAGGUCCCGgGCC- -5'
29136 3' -65.8 NC_006146.1 + 167642 0.79 0.069665
Target:  5'- cGgGGCCCGGC-GCgugCCgGGGGCCCGGg -3'
miRNA:   3'- uCgCCGGGUCGuCGa--GG-UCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 142232 0.79 0.073248
Target:  5'- aGGCGGaCCCgAGgGGCUCUGGGGCgCCGGu -3'
miRNA:   3'- -UCGCC-GGG-UCgUCGAGGUCCCG-GGCC- -5'
29136 3' -65.8 NC_006146.1 + 154544 0.79 0.073248
Target:  5'- aGGCGGaCCCgAGgGGCUCUGGGGCgCCGGu -3'
miRNA:   3'- -UCGCC-GGG-UCgUCGAGGUCCCG-GGCC- -5'
29136 3' -65.8 NC_006146.1 + 148388 0.79 0.073248
Target:  5'- aGGCGGaCCCgAGgGGCUCUGGGGCgCCGGu -3'
miRNA:   3'- -UCGCC-GGG-UCgUCGAGGUCCCG-GGCC- -5'
29136 3' -65.8 NC_006146.1 + 151466 0.79 0.073248
Target:  5'- aGGCGGaCCCgAGgGGCUCUGGGGCgCCGGu -3'
miRNA:   3'- -UCGCC-GGG-UCgUCGAGGUCCCG-GGCC- -5'
29136 3' -65.8 NC_006146.1 + 145310 0.79 0.073248
Target:  5'- aGGCGGaCCCgAGgGGCUCUGGGGCgCCGGu -3'
miRNA:   3'- -UCGCC-GGG-UCgUCGAGGUCCCG-GGCC- -5'
29136 3' -65.8 NC_006146.1 + 157622 0.79 0.073248
Target:  5'- aGGCGGaCCCgAGgGGCUCUGGGGCgCCGGu -3'
miRNA:   3'- -UCGCC-GGG-UCgUCGAGGUCCCG-GGCC- -5'
29136 3' -65.8 NC_006146.1 + 47013 0.77 0.091669
Target:  5'- cAGCGGCCCGGuCGGaCUCgCGGGcGCCCuGGg -3'
miRNA:   3'- -UCGCCGGGUC-GUC-GAG-GUCC-CGGG-CC- -5'
29136 3' -65.8 NC_006146.1 + 92088 0.77 0.091669
Target:  5'- gGGCGGCCCGGCcuggGGCUgCugcuggggggcGGGCCCGGc -3'
miRNA:   3'- -UCGCCGGGUCG----UCGAgGu----------CCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 44741 0.77 0.096085
Target:  5'- cGGUGGCCgCgGGCGGCUgugguugUCGGGGCCCGGc -3'
miRNA:   3'- -UCGCCGG-G-UCGUCGA-------GGUCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 55258 0.77 0.096323
Target:  5'- gGGCGGCCCgggcgaAGCGGCUCgUGGGGCUCGcGg -3'
miRNA:   3'- -UCGCCGGG------UCGUCGAG-GUCCCGGGC-C- -5'
29136 3' -65.8 NC_006146.1 + 137970 0.77 0.1012
Target:  5'- cGCGGCCgGGC--CUCCcgGGGGCCCGGc -3'
miRNA:   3'- uCGCCGGgUCGucGAGG--UCCCGGGCC- -5'
29136 3' -65.8 NC_006146.1 + 137660 0.76 0.117262
Target:  5'- cAGCGGCCCGGCGGacccgCCGGcGGCCaccCGGc -3'
miRNA:   3'- -UCGCCGGGUCGUCga---GGUC-CCGG---GCC- -5'
29136 3' -65.8 NC_006146.1 + 167365 0.76 0.119576
Target:  5'- cGGCGGCgCCGGCcgggggcugagggGGCUCCcgagggcggggccGGGGCCUGGc -3'
miRNA:   3'- -UCGCCG-GGUCG-------------UCGAGG-------------UCCCGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.