Results 1 - 20 of 307 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29137 | 3' | -64.1 | NC_006146.1 | + | 115621 | 0.66 | 0.538476 |
Target: 5'- cGGCUGCUGCCcaccGCgAGCCCC-ACGa- -3' miRNA: 3'- uCCGGCGGCGGu---CG-UCGGGGcUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 46249 | 0.66 | 0.518773 |
Target: 5'- aGGGCCGgUGaagCGGCGGugcgcguCCCCGACGUUu -3' miRNA: 3'- -UCCGGCgGCg--GUCGUC-------GGGGCUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 46643 | 0.66 | 0.519705 |
Target: 5'- gGGGCCGagaCGUacucccugAGCAGuuCCCCGGCGUUg -3' miRNA: 3'- -UCCGGCg--GCGg-------UCGUC--GGGGCUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 136726 | 0.66 | 0.519705 |
Target: 5'- cGGCCGCUGCCGGguccgcugccCGGUCCUGGa--- -3' miRNA: 3'- uCCGGCGGCGGUC----------GUCGGGGCUguag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 57368 | 0.66 | 0.567045 |
Target: 5'- gAGGCUGCggcgguggCGCCGGUgggcuGGCCCCG-CGa- -3' miRNA: 3'- -UCCGGCG--------GCGGUCG-----UCGGGGCuGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 106592 | 0.66 | 0.519705 |
Target: 5'- --aCUGCCGCCAGUacGGCCCCaGGCc-- -3' miRNA: 3'- uccGGCGGCGGUCG--UCGGGG-CUGuag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 67626 | 0.66 | 0.519705 |
Target: 5'- cGGCCGagGCCAGUGgaaggcGCCCCcuguaGGCAUCu -3' miRNA: 3'- uCCGGCggCGGUCGU------CGGGG-----CUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 81777 | 0.66 | 0.526247 |
Target: 5'- uGGCCGCCcggucuccggggguGCCaccuggGGCAGUgCCGguaGCAUCg -3' miRNA: 3'- uCCGGCGG--------------CGG------UCGUCGgGGC---UGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 21251 | 0.66 | 0.52906 |
Target: 5'- cAGGCgCGCUGCCGGCGcGUgCUCGACc-- -3' miRNA: 3'- -UCCG-GCGGCGGUCGU-CG-GGGCUGuag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 76384 | 0.66 | 0.52906 |
Target: 5'- aGGGCgCGCCGggggagggaCCGGgGGCgCCGACGg- -3' miRNA: 3'- -UCCG-GCGGC---------GGUCgUCGgGGCUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 73170 | 0.66 | 0.538476 |
Target: 5'- gAGG-CGCC-CCAGCAcCuCCCGGCAUa -3' miRNA: 3'- -UCCgGCGGcGGUCGUcG-GGGCUGUAg -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 103759 | 0.66 | 0.567045 |
Target: 5'- cAGGa-GCgGCCAGCGGCuCCCGGu--- -3' miRNA: 3'- -UCCggCGgCGGUCGUCG-GGGCUguag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 23192 | 0.66 | 0.538476 |
Target: 5'- cAGGCCccGCCGCCuuccuGGCCCUGuugcuCAUCc -3' miRNA: 3'- -UCCGG--CGGCGGucg--UCGGGGCu----GUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 118132 | 0.66 | 0.538476 |
Target: 5'- cGGCCGCuuCGCCGGCA-UCCaguGCGUCa -3' miRNA: 3'- uCCGGCG--GCGGUCGUcGGGgc-UGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 123307 | 0.66 | 0.557474 |
Target: 5'- uGGCgGCCGCCgAGUGGaUCCgGgACGUCu -3' miRNA: 3'- uCCGgCGGCGG-UCGUC-GGGgC-UGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 130516 | 0.66 | 0.557474 |
Target: 5'- uAGGgUGCUGUCAGCAGCCacaauCCGgGCAa- -3' miRNA: 3'- -UCCgGCGGCGGUCGUCGG-----GGC-UGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 71430 | 0.66 | 0.557474 |
Target: 5'- aAGGgCGCgGCCGGCauuuuGGCaCCUGGCGc- -3' miRNA: 3'- -UCCgGCGgCGGUCG-----UCG-GGGCUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 127408 | 0.66 | 0.557474 |
Target: 5'- uGGGCCccGCCGCCGGagccggugucaaCGGCCgCCGAg--- -3' miRNA: 3'- -UCCGG--CGGCGGUC------------GUCGG-GGCUguag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 168111 | 0.66 | 0.557474 |
Target: 5'- aAGGCCuGCuggCGCCuGGCGucuuCCCUGACAUCc -3' miRNA: 3'- -UCCGG-CG---GCGG-UCGUc---GGGGCUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 75808 | 0.66 | 0.567045 |
Target: 5'- cGGgCGCCGCCuucgaGGCCCUgcggGACAUg -3' miRNA: 3'- uCCgGCGGCGGucg--UCGGGG----CUGUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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