miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 103759 0.66 0.567045
Target:  5'- cAGGa-GCgGCCAGCGGCuCCCGGu--- -3'
miRNA:   3'- -UCCggCGgCGGUCGUCG-GGGCUguag -5'
29137 3' -64.1 NC_006146.1 + 76384 0.66 0.52906
Target:  5'- aGGGCgCGCCGggggagggaCCGGgGGCgCCGACGg- -3'
miRNA:   3'- -UCCG-GCGGC---------GGUCgUCGgGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 21251 0.66 0.52906
Target:  5'- cAGGCgCGCUGCCGGCGcGUgCUCGACc-- -3'
miRNA:   3'- -UCCG-GCGGCGGUCGU-CG-GGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 81777 0.66 0.526247
Target:  5'- uGGCCGCCcggucuccggggguGCCaccuggGGCAGUgCCGguaGCAUCg -3'
miRNA:   3'- uCCGGCGG--------------CGG------UCGUCGgGGC---UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 46249 0.66 0.518773
Target:  5'- aGGGCCGgUGaagCGGCGGugcgcguCCCCGACGUUu -3'
miRNA:   3'- -UCCGGCgGCg--GUCGUC-------GGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 46643 0.66 0.519705
Target:  5'- gGGGCCGagaCGUacucccugAGCAGuuCCCCGGCGUUg -3'
miRNA:   3'- -UCCGGCg--GCGg-------UCGUC--GGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 106592 0.66 0.519705
Target:  5'- --aCUGCCGCCAGUacGGCCCCaGGCc-- -3'
miRNA:   3'- uccGGCGGCGGUCG--UCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 67626 0.66 0.519705
Target:  5'- cGGCCGagGCCAGUGgaaggcGCCCCcuguaGGCAUCu -3'
miRNA:   3'- uCCGGCggCGGUCGU------CGGGG-----CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 136726 0.66 0.519705
Target:  5'- cGGCCGCUGCCGGguccgcugccCGGUCCUGGa--- -3'
miRNA:   3'- uCCGGCGGCGGUC----------GUCGGGGCUguag -5'
29137 3' -64.1 NC_006146.1 + 73170 0.66 0.538476
Target:  5'- gAGG-CGCC-CCAGCAcCuCCCGGCAUa -3'
miRNA:   3'- -UCCgGCGGcGGUCGUcG-GGGCUGUAg -5'
29137 3' -64.1 NC_006146.1 + 115621 0.66 0.538476
Target:  5'- cGGCUGCUGCCcaccGCgAGCCCC-ACGa- -3'
miRNA:   3'- uCCGGCGGCGGu---CG-UCGGGGcUGUag -5'
29137 3' -64.1 NC_006146.1 + 23192 0.66 0.538476
Target:  5'- cAGGCCccGCCGCCuuccuGGCCCUGuugcuCAUCc -3'
miRNA:   3'- -UCCGG--CGGCGGucg--UCGGGGCu----GUAG- -5'
29137 3' -64.1 NC_006146.1 + 103122 0.66 0.567045
Target:  5'- uGGCCGCCGUCA-CGuCCCUGGCc-- -3'
miRNA:   3'- uCCGGCGGCGGUcGUcGGGGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 75808 0.66 0.567045
Target:  5'- cGGgCGCCGCCuucgaGGCCCUgcggGACAUg -3'
miRNA:   3'- uCCgGCGGCGGucg--UCGGGG----CUGUAg -5'
29137 3' -64.1 NC_006146.1 + 168111 0.66 0.557474
Target:  5'- aAGGCCuGCuggCGCCuGGCGucuuCCCUGACAUCc -3'
miRNA:   3'- -UCCGG-CG---GCGG-UCGUc---GGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 127408 0.66 0.557474
Target:  5'- uGGGCCccGCCGCCGGagccggugucaaCGGCCgCCGAg--- -3'
miRNA:   3'- -UCCGG--CGGCGGUC------------GUCGG-GGCUguag -5'
29137 3' -64.1 NC_006146.1 + 71430 0.66 0.557474
Target:  5'- aAGGgCGCgGCCGGCauuuuGGCaCCUGGCGc- -3'
miRNA:   3'- -UCCgGCGgCGGUCG-----UCG-GGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 130516 0.66 0.557474
Target:  5'- uAGGgUGCUGUCAGCAGCCacaauCCGgGCAa- -3'
miRNA:   3'- -UCCgGCGGCGGUCGUCGG-----GGC-UGUag -5'
29137 3' -64.1 NC_006146.1 + 123307 0.66 0.557474
Target:  5'- uGGCgGCCGCCgAGUGGaUCCgGgACGUCu -3'
miRNA:   3'- uCCGgCGGCGG-UCGUC-GGGgC-UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 118132 0.66 0.538476
Target:  5'- cGGCCGCuuCGCCGGCA-UCCaguGCGUCa -3'
miRNA:   3'- uCCGGCG--GCGGUCGUcGGGgc-UGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.