Results 1 - 20 of 307 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29137 | 3' | -64.1 | NC_006146.1 | + | 152037 | 0.71 | 0.281515 |
Target: 5'- gAGGCCcCCGCacguccaccacccCGGCAGCgCCCGGgGUCu -3' miRNA: 3'- -UCCGGcGGCG-------------GUCGUCG-GGGCUgUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 156786 | 1.07 | 0.000733 |
Target: 5'- uAGGCCGCCGCCAGCAGCCCCGACAUCc -3' miRNA: 3'- -UCCGGCGGCGGUCGUCGGGGCUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 45810 | 0.76 | 0.139151 |
Target: 5'- aAGGCCGCCGCCacGGCcGCCUCGAa--- -3' miRNA: 3'- -UCCGGCGGCGG--UCGuCGGGGCUguag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 46979 | 0.72 | 0.252033 |
Target: 5'- cGGCCGCCGCCAGgAauuGCgCCCGuCGg- -3' miRNA: 3'- uCCGGCGGCGGUCgU---CG-GGGCuGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 55941 | 0.72 | 0.257836 |
Target: 5'- uGGGCUGCUGCguGCc-CCCCGcCAUCg -3' miRNA: 3'- -UCCGGCGGCGguCGucGGGGCuGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 50354 | 0.75 | 0.16501 |
Target: 5'- cGGCCaGCCuggggaucuugGCCAGCAGUCCCGccgccGCAUCc -3' miRNA: 3'- uCCGG-CGG-----------CGGUCGUCGGGGC-----UGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 78830 | 0.74 | 0.190529 |
Target: 5'- cGGGCCGCCcCCcgcAGCAGCCCCaGGCc-- -3' miRNA: 3'- -UCCGGCGGcGG---UCGUCGGGG-CUGuag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 155719 | 0.73 | 0.21438 |
Target: 5'- aAGGCgGCCGCgCAGuCGGCCUucagcgcuuccaCGGCGUCg -3' miRNA: 3'- -UCCGgCGGCG-GUC-GUCGGG------------GCUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 66529 | 0.71 | 0.269769 |
Target: 5'- -cGCCGCUGUCaaacagGGgGGCCCCGAUGUCu -3' miRNA: 3'- ucCGGCGGCGG------UCgUCGGGGCUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 149551 | 0.71 | 0.282144 |
Target: 5'- cAGGaaGcCCGCCGGCAGCCCCucCGa- -3' miRNA: 3'- -UCCggC-GGCGGUCGUCGGGGcuGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 57368 | 0.66 | 0.567045 |
Target: 5'- gAGGCUGCggcgguggCGCCGGUgggcuGGCCCCG-CGa- -3' miRNA: 3'- -UCCGGCG--------GCGGUCG-----UCGGGGCuGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 58852 | 0.74 | 0.173156 |
Target: 5'- -cGCCGUCaagGCCGGCAGCCCCuuCAUCc -3' miRNA: 3'- ucCGGCGG---CGGUCGUCGGGGcuGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 147368 | 0.74 | 0.173156 |
Target: 5'- cGGCgGCCGCCAGacacgggAGUCCCGAguUCa -3' miRNA: 3'- uCCGgCGGCGGUCg------UCGGGGCUguAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 146829 | 0.72 | 0.263748 |
Target: 5'- gAGGCCG-CGCCAGCguagAGCCCgGGCc-- -3' miRNA: 3'- -UCCGGCgGCGGUCG----UCGGGgCUGuag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 33235 | 0.71 | 0.269769 |
Target: 5'- cGGGUgGCCGCCGGCGGgUCCGcCGg- -3' miRNA: 3'- -UCCGgCGGCGGUCGUCgGGGCuGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 49918 | 0.74 | 0.181659 |
Target: 5'- gAGGCCGCCgagGCCAcuCGGUCCCgGACGUCc -3' miRNA: 3'- -UCCGGCGG---CGGUc-GUCGGGG-CUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 43336 | 0.71 | 0.282144 |
Target: 5'- cGGCCGCCcaggGCCAgcaggcGCAGCCCgUGGCAg- -3' miRNA: 3'- uCCGGCGG----CGGU------CGUCGGG-GCUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 99216 | 0.71 | 0.282144 |
Target: 5'- gAGGCCGCgGCCucGGC-GCgCCCGACcaccGUCu -3' miRNA: 3'- -UCCGGCGgCGG--UCGuCG-GGGCUG----UAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 55494 | 0.73 | 0.209413 |
Target: 5'- gAGGCCcgGCCGCCAGCuGCCuCCuGCAc- -3' miRNA: 3'- -UCCGG--CGGCGGUCGuCGG-GGcUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 109154 | 0.72 | 0.263748 |
Target: 5'- cGGCCGCUGCCuuGGUuucGGUCCCGGCccuuaGUCu -3' miRNA: 3'- uCCGGCGGCGG--UCG---UCGGGGCUG-----UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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