miRNA display CGI


Results 1 - 20 of 307 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 156786 1.07 0.000733
Target:  5'- uAGGCCGCCGCCAGCAGCCCCGACAUCc -3'
miRNA:   3'- -UCCGGCGGCGGUCGUCGGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 43336 0.71 0.282144
Target:  5'- cGGCCGCCcaggGCCAgcaggcGCAGCCCgUGGCAg- -3'
miRNA:   3'- uCCGGCGG----CGGU------CGUCGGG-GCUGUag -5'
29137 3' -64.1 NC_006146.1 + 99216 0.71 0.282144
Target:  5'- gAGGCCGCgGCCucGGC-GCgCCCGACcaccGUCu -3'
miRNA:   3'- -UCCGGCGgCGG--UCGuCG-GGGCUG----UAG- -5'
29137 3' -64.1 NC_006146.1 + 57368 0.66 0.567045
Target:  5'- gAGGCUGCggcgguggCGCCGGUgggcuGGCCCCG-CGa- -3'
miRNA:   3'- -UCCGGCG--------GCGGUCG-----UCGGGGCuGUag -5'
29137 3' -64.1 NC_006146.1 + 58852 0.74 0.173156
Target:  5'- -cGCCGUCaagGCCGGCAGCCCCuuCAUCc -3'
miRNA:   3'- ucCGGCGG---CGGUCGUCGGGGcuGUAG- -5'
29137 3' -64.1 NC_006146.1 + 49918 0.74 0.181659
Target:  5'- gAGGCCGCCgagGCCAcuCGGUCCCgGACGUCc -3'
miRNA:   3'- -UCCGGCGG---CGGUc-GUCGGGG-CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 55494 0.73 0.209413
Target:  5'- gAGGCCcgGCCGCCAGCuGCCuCCuGCAc- -3'
miRNA:   3'- -UCCGG--CGGCGGUCGuCGG-GGcUGUag -5'
29137 3' -64.1 NC_006146.1 + 155719 0.73 0.21438
Target:  5'- aAGGCgGCCGCgCAGuCGGCCUucagcgcuuccaCGGCGUCg -3'
miRNA:   3'- -UCCGgCGGCG-GUC-GUCGGG------------GCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 109154 0.72 0.263748
Target:  5'- cGGCCGCUGCCuuGGUuucGGUCCCGGCccuuaGUCu -3'
miRNA:   3'- uCCGGCGGCGG--UCG---UCGGGGCUG-----UAG- -5'
29137 3' -64.1 NC_006146.1 + 114224 0.71 0.282144
Target:  5'- aGGGCCaGCC-CCAGgGGgCCCGGCAccUCa -3'
miRNA:   3'- -UCCGG-CGGcGGUCgUCgGGGCUGU--AG- -5'
29137 3' -64.1 NC_006146.1 + 33235 0.71 0.269769
Target:  5'- cGGGUgGCCGCCGGCGGgUCCGcCGg- -3'
miRNA:   3'- -UCCGgCGGCGGUCGUCgGGGCuGUag -5'
29137 3' -64.1 NC_006146.1 + 55941 0.72 0.257836
Target:  5'- uGGGCUGCUGCguGCc-CCCCGcCAUCg -3'
miRNA:   3'- -UCCGGCGGCGguCGucGGGGCuGUAG- -5'
29137 3' -64.1 NC_006146.1 + 45810 0.76 0.139151
Target:  5'- aAGGCCGCCGCCacGGCcGCCUCGAa--- -3'
miRNA:   3'- -UCCGGCGGCGG--UCGuCGGGGCUguag -5'
29137 3' -64.1 NC_006146.1 + 66529 0.71 0.269769
Target:  5'- -cGCCGCUGUCaaacagGGgGGCCCCGAUGUCu -3'
miRNA:   3'- ucCGGCGGCGG------UCgUCGGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 50354 0.75 0.16501
Target:  5'- cGGCCaGCCuggggaucuugGCCAGCAGUCCCGccgccGCAUCc -3'
miRNA:   3'- uCCGG-CGG-----------CGGUCGUCGGGGC-----UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 46979 0.72 0.252033
Target:  5'- cGGCCGCCGCCAGgAauuGCgCCCGuCGg- -3'
miRNA:   3'- uCCGGCGGCGGUCgU---CG-GGGCuGUag -5'
29137 3' -64.1 NC_006146.1 + 152037 0.71 0.281515
Target:  5'- gAGGCCcCCGCacguccaccacccCGGCAGCgCCCGGgGUCu -3'
miRNA:   3'- -UCCGGcGGCG-------------GUCGUCG-GGGCUgUAG- -5'
29137 3' -64.1 NC_006146.1 + 149551 0.71 0.282144
Target:  5'- cAGGaaGcCCGCCGGCAGCCCCucCGa- -3'
miRNA:   3'- -UCCggC-GGCGGUCGUCGGGGcuGUag -5'
29137 3' -64.1 NC_006146.1 + 147368 0.74 0.173156
Target:  5'- cGGCgGCCGCCAGacacgggAGUCCCGAguUCa -3'
miRNA:   3'- uCCGgCGGCGGUCg------UCGGGGCUguAG- -5'
29137 3' -64.1 NC_006146.1 + 78830 0.74 0.190529
Target:  5'- cGGGCCGCCcCCcgcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCCGGCGGcGG---UCGUCGGGG-CUGuag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.