miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 705 0.71 0.275901
Target:  5'- uGGCCcCCGCCAGgcccCGGCCCCGcCcUCg -3'
miRNA:   3'- uCCGGcGGCGGUC----GUCGGGGCuGuAG- -5'
29137 3' -64.1 NC_006146.1 + 757 0.67 0.501197
Target:  5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3'
miRNA:   3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5'
29137 3' -64.1 NC_006146.1 + 821 0.69 0.396455
Target:  5'- cGGCCccucCCGCCGGCcauccccacgcgcGGCCCCgggcccuccccGACAUCc -3'
miRNA:   3'- uCCGGc---GGCGGUCG-------------UCGGGG-----------CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 930 0.7 0.335406
Target:  5'- cGGgCGCgCGCCGGCcucccgucccgaaGGCCCUGGCAc- -3'
miRNA:   3'- uCCgGCG-GCGGUCG-------------UCGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 1636 0.71 0.275901
Target:  5'- uGGCCcCCGCCAGgcccCGGCCCCGcCcUCg -3'
miRNA:   3'- uCCGGcGGCGGUC----GUCGGGGCuGuAG- -5'
29137 3' -64.1 NC_006146.1 + 1688 0.67 0.501197
Target:  5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3'
miRNA:   3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5'
29137 3' -64.1 NC_006146.1 + 1753 0.69 0.396455
Target:  5'- cGGCCccucCCGCCGGCcauccccacgcgcGGCCCCgggcccuccccGACAUCc -3'
miRNA:   3'- uCCGGc---GGCGGUCG-------------UCGGGG-----------CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 1862 0.7 0.335406
Target:  5'- cGGgCGCgCGCCGGCcucccgucccgaaGGCCCUGGCAc- -3'
miRNA:   3'- uCCgGCG-GCGGUCG-------------UCGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 2568 0.71 0.275901
Target:  5'- uGGCCcCCGCCAGgcccCGGCCCCGcCcUCg -3'
miRNA:   3'- uCCGGcGGCGGUC----GUCGGGGCuGuAG- -5'
29137 3' -64.1 NC_006146.1 + 2620 0.67 0.501197
Target:  5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3'
miRNA:   3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5'
29137 3' -64.1 NC_006146.1 + 2685 0.69 0.396455
Target:  5'- cGGCCccucCCGCCGGCcauccccacgcgcGGCCCCgggcccuccccGACAUCc -3'
miRNA:   3'- uCCGGc---GGCGGUCG-------------UCGGGG-----------CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 2794 0.7 0.335406
Target:  5'- cGGgCGCgCGCCGGCcucccgucccgaaGGCCCUGGCAc- -3'
miRNA:   3'- uCCgGCG-GCGGUCG-------------UCGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 3500 0.71 0.275901
Target:  5'- uGGCCcCCGCCAGgcccCGGCCCCGcCcUCg -3'
miRNA:   3'- uCCGGcGGCGGUC----GUCGGGGCuGuAG- -5'
29137 3' -64.1 NC_006146.1 + 3552 0.67 0.501197
Target:  5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3'
miRNA:   3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5'
29137 3' -64.1 NC_006146.1 + 3617 0.69 0.396455
Target:  5'- cGGCCccucCCGCCGGCcauccccacgcgcGGCCCCgggcccuccccGACAUCc -3'
miRNA:   3'- uCCGGc---GGCGGUCG-------------UCGGGG-----------CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 3726 0.7 0.335406
Target:  5'- cGGgCGCgCGCCGGCcucccgucccgaaGGCCCUGGCAc- -3'
miRNA:   3'- uCCgGCG-GCGGUCG-------------UCGGGGCUGUag -5'
29137 3' -64.1 NC_006146.1 + 4526 0.68 0.430396
Target:  5'- gGGGUgaccaucuCGgUGCCGGCAGCCgCCGACu-- -3'
miRNA:   3'- -UCCG--------GCgGCGGUCGUCGG-GGCUGuag -5'
29137 3' -64.1 NC_006146.1 + 9133 0.67 0.510416
Target:  5'- cAGGCCcCCGCCcaGGC-GCCCCcucgGACcUCa -3'
miRNA:   3'- -UCCGGcGGCGG--UCGuCGGGG----CUGuAG- -5'
29137 3' -64.1 NC_006146.1 + 11848 0.7 0.350746
Target:  5'- cGGGCC-CUGCUucucgggcuuggGGCGGgCCCGACGUUg -3'
miRNA:   3'- -UCCGGcGGCGG------------UCGUCgGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 13069 0.7 0.315037
Target:  5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3'
miRNA:   3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.