Results 1 - 20 of 307 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29137 | 3' | -64.1 | NC_006146.1 | + | 705 | 0.71 | 0.275901 |
Target: 5'- uGGCCcCCGCCAGgcccCGGCCCCGcCcUCg -3' miRNA: 3'- uCCGGcGGCGGUC----GUCGGGGCuGuAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 757 | 0.67 | 0.501197 |
Target: 5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3' miRNA: 3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 821 | 0.69 | 0.396455 |
Target: 5'- cGGCCccucCCGCCGGCcauccccacgcgcGGCCCCgggcccuccccGACAUCc -3' miRNA: 3'- uCCGGc---GGCGGUCG-------------UCGGGG-----------CUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 930 | 0.7 | 0.335406 |
Target: 5'- cGGgCGCgCGCCGGCcucccgucccgaaGGCCCUGGCAc- -3' miRNA: 3'- uCCgGCG-GCGGUCG-------------UCGGGGCUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 1636 | 0.71 | 0.275901 |
Target: 5'- uGGCCcCCGCCAGgcccCGGCCCCGcCcUCg -3' miRNA: 3'- uCCGGcGGCGGUC----GUCGGGGCuGuAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 1688 | 0.67 | 0.501197 |
Target: 5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3' miRNA: 3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 1753 | 0.69 | 0.396455 |
Target: 5'- cGGCCccucCCGCCGGCcauccccacgcgcGGCCCCgggcccuccccGACAUCc -3' miRNA: 3'- uCCGGc---GGCGGUCG-------------UCGGGG-----------CUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 1862 | 0.7 | 0.335406 |
Target: 5'- cGGgCGCgCGCCGGCcucccgucccgaaGGCCCUGGCAc- -3' miRNA: 3'- uCCgGCG-GCGGUCG-------------UCGGGGCUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 2568 | 0.71 | 0.275901 |
Target: 5'- uGGCCcCCGCCAGgcccCGGCCCCGcCcUCg -3' miRNA: 3'- uCCGGcGGCGGUC----GUCGGGGCuGuAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 2620 | 0.67 | 0.501197 |
Target: 5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3' miRNA: 3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 2685 | 0.69 | 0.396455 |
Target: 5'- cGGCCccucCCGCCGGCcauccccacgcgcGGCCCCgggcccuccccGACAUCc -3' miRNA: 3'- uCCGGc---GGCGGUCG-------------UCGGGG-----------CUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 2794 | 0.7 | 0.335406 |
Target: 5'- cGGgCGCgCGCCGGCcucccgucccgaaGGCCCUGGCAc- -3' miRNA: 3'- uCCgGCG-GCGGUCG-------------UCGGGGCUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 3500 | 0.71 | 0.275901 |
Target: 5'- uGGCCcCCGCCAGgcccCGGCCCCGcCcUCg -3' miRNA: 3'- uCCGGcGGCGGUC----GUCGGGGCuGuAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 3552 | 0.67 | 0.501197 |
Target: 5'- cGGcGCCGCCGCgCGuGCAGCCgagcgugaCGACGg- -3' miRNA: 3'- -UC-CGGCGGCG-GU-CGUCGGg-------GCUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 3617 | 0.69 | 0.396455 |
Target: 5'- cGGCCccucCCGCCGGCcauccccacgcgcGGCCCCgggcccuccccGACAUCc -3' miRNA: 3'- uCCGGc---GGCGGUCG-------------UCGGGG-----------CUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 3726 | 0.7 | 0.335406 |
Target: 5'- cGGgCGCgCGCCGGCcucccgucccgaaGGCCCUGGCAc- -3' miRNA: 3'- uCCgGCG-GCGGUCG-------------UCGGGGCUGUag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 4526 | 0.68 | 0.430396 |
Target: 5'- gGGGUgaccaucuCGgUGCCGGCAGCCgCCGACu-- -3' miRNA: 3'- -UCCG--------GCgGCGGUCGUCGG-GGCUGuag -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 9133 | 0.67 | 0.510416 |
Target: 5'- cAGGCCcCCGCCcaGGC-GCCCCcucgGACcUCa -3' miRNA: 3'- -UCCGGcGGCGG--UCGuCGGGG----CUGuAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 11848 | 0.7 | 0.350746 |
Target: 5'- cGGGCC-CUGCUucucgggcuuggGGCGGgCCCGACGUUg -3' miRNA: 3'- -UCCGGcGGCGG------------UCGUCgGGGCUGUAG- -5' |
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29137 | 3' | -64.1 | NC_006146.1 | + | 13069 | 0.7 | 0.315037 |
Target: 5'- aAGGCgGCCGCCcuCAGUCCCccaGACAg- -3' miRNA: 3'- -UCCGgCGGCGGucGUCGGGG---CUGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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