miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 3' -64.1 NC_006146.1 + 156786 1.07 0.000733
Target:  5'- uAGGCCGCCGCCAGCAGCCCCGACAUCc -3'
miRNA:   3'- -UCCGGCGGCGGUCGUCGGGGCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 45810 0.76 0.139151
Target:  5'- aAGGCCGCCGCCacGGCcGCCUCGAa--- -3'
miRNA:   3'- -UCCGGCGGCGG--UCGuCGGGGCUguag -5'
29137 3' -64.1 NC_006146.1 + 126152 0.75 0.161068
Target:  5'- cGGGCCccgacaaccacaGCCGCCcGCGGCCaCCG-CAUCa -3'
miRNA:   3'- -UCCGG------------CGGCGGuCGUCGG-GGCuGUAG- -5'
29137 3' -64.1 NC_006146.1 + 50354 0.75 0.16501
Target:  5'- cGGCCaGCCuggggaucuugGCCAGCAGUCCCGccgccGCAUCc -3'
miRNA:   3'- uCCGG-CGG-----------CGGUCGUCGGGGC-----UGUAG- -5'
29137 3' -64.1 NC_006146.1 + 39817 0.74 0.173156
Target:  5'- cGGCCGuuGacggcCCGGCGGCCUCGGCcgCa -3'
miRNA:   3'- uCCGGCggC-----GGUCGUCGGGGCUGuaG- -5'
29137 3' -64.1 NC_006146.1 + 58852 0.74 0.173156
Target:  5'- -cGCCGUCaagGCCGGCAGCCCCuuCAUCc -3'
miRNA:   3'- ucCGGCGG---CGGUCGUCGGGGcuGUAG- -5'
29137 3' -64.1 NC_006146.1 + 147368 0.74 0.173156
Target:  5'- cGGCgGCCGCCAGacacgggAGUCCCGAguUCa -3'
miRNA:   3'- uCCGgCGGCGGUCg------UCGGGGCUguAG- -5'
29137 3' -64.1 NC_006146.1 + 49918 0.74 0.181659
Target:  5'- gAGGCCGCCgagGCCAcuCGGUCCCgGACGUCc -3'
miRNA:   3'- -UCCGGCGG---CGGUc-GUCGGGG-CUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 78830 0.74 0.190529
Target:  5'- cGGGCCGCCcCCcgcAGCAGCCCCaGGCc-- -3'
miRNA:   3'- -UCCGGCGGcGG---UCGUCGGGG-CUGuag -5'
29137 3' -64.1 NC_006146.1 + 61700 0.73 0.199305
Target:  5'- gGGGaCCGCCGCCAGUccAGCCCUcugucugGGCcUCa -3'
miRNA:   3'- -UCC-GGCGGCGGUCG--UCGGGG-------CUGuAG- -5'
29137 3' -64.1 NC_006146.1 + 55494 0.73 0.209413
Target:  5'- gAGGCCcgGCCGCCAGCuGCCuCCuGCAc- -3'
miRNA:   3'- -UCCGG--CGGCGGUCGuCGG-GGcUGUag -5'
29137 3' -64.1 NC_006146.1 + 155719 0.73 0.21438
Target:  5'- aAGGCgGCCGCgCAGuCGGCCUucagcgcuuccaCGGCGUCg -3'
miRNA:   3'- -UCCGgCGGCG-GUC-GUCGGG------------GCUGUAG- -5'
29137 3' -64.1 NC_006146.1 + 114080 0.73 0.21438
Target:  5'- gAGGCCGCCucggggGCCAGaAGCCCCGcCcgCc -3'
miRNA:   3'- -UCCGGCGG------CGGUCgUCGGGGCuGuaG- -5'
29137 3' -64.1 NC_006146.1 + 102333 0.73 0.229359
Target:  5'- cAGGCCcagaucgaucucgGCuCGCCAGCGGUCCgGGCAcUCa -3'
miRNA:   3'- -UCCGG-------------CG-GCGGUCGUCGGGgCUGU-AG- -5'
29137 3' -64.1 NC_006146.1 + 46979 0.72 0.252033
Target:  5'- cGGCCGCCGCCAGgAauuGCgCCCGuCGg- -3'
miRNA:   3'- uCCGGCGGCGGUCgU---CG-GGGCuGUag -5'
29137 3' -64.1 NC_006146.1 + 125842 0.72 0.257251
Target:  5'- gAGGCaccucaGCCGCCccuagggAGcCGGCCCCGGCcUCu -3'
miRNA:   3'- -UCCGg-----CGGCGG-------UC-GUCGGGGCUGuAG- -5'
29137 3' -64.1 NC_006146.1 + 55941 0.72 0.257836
Target:  5'- uGGGCUGCUGCguGCc-CCCCGcCAUCg -3'
miRNA:   3'- -UCCGGCGGCGguCGucGGGGCuGUAG- -5'
29137 3' -64.1 NC_006146.1 + 146829 0.72 0.263748
Target:  5'- gAGGCCG-CGCCAGCguagAGCCCgGGCc-- -3'
miRNA:   3'- -UCCGGCgGCGGUCG----UCGGGgCUGuag -5'
29137 3' -64.1 NC_006146.1 + 109154 0.72 0.263748
Target:  5'- cGGCCGCUGCCuuGGUuucGGUCCCGGCccuuaGUCu -3'
miRNA:   3'- uCCGGCGGCGG--UCG---UCGGGGCUG-----UAG- -5'
29137 3' -64.1 NC_006146.1 + 106480 0.72 0.263748
Target:  5'- uGGCagcguaCGCCGCC-GUGGCCCCGgccuACAUCa -3'
miRNA:   3'- uCCG------GCGGCGGuCGUCGGGGC----UGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.