miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29137 5' -58.1 NC_006146.1 + 139131 0.71 0.604082
Target:  5'- gGGGGCUgUGGGCCgaaCGGGggcucccguccCCCGGGGg -3'
miRNA:   3'- -CCCUGAgAUCUGGag-GUCU-----------GGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 101043 0.71 0.613982
Target:  5'- uGGGcCUCUAcgcccGACCUCCcgaGGGCCaCGGGc -3'
miRNA:   3'- -CCCuGAGAU-----CUGGAGG---UCUGG-GCCCu -5'
29137 5' -58.1 NC_006146.1 + 24087 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 27165 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 14854 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 21009 0.71 0.623894
Target:  5'- aGGGgucuucuaccucACUCUAGcCCUCCAGGCCCu--- -3'
miRNA:   3'- -CCC------------UGAGAUCuGGAGGUCUGGGcccu -5'
29137 5' -58.1 NC_006146.1 + 121053 0.7 0.633813
Target:  5'- uGGACUUUGacGACCUCCuGACCCGc-- -3'
miRNA:   3'- cCCUGAGAU--CUGGAGGuCUGGGCccu -5'
29137 5' -58.1 NC_006146.1 + 112529 0.7 0.633813
Target:  5'- aGGGC-CUGGgucACCUCgaacucggagcuCAGACCCGGGGu -3'
miRNA:   3'- cCCUGaGAUC---UGGAG------------GUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 41424 0.7 0.633813
Target:  5'- gGGGGCacccgaguuuUCUAGGCUcCUAGAUCUGGGGc -3'
miRNA:   3'- -CCCUG----------AGAUCUGGaGGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 73027 0.7 0.653638
Target:  5'- -aGGCUC-AGGCCcucguUCCAcGGCCCGGGGu -3'
miRNA:   3'- ccCUGAGaUCUGG-----AGGU-CUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 12963 0.7 0.653638
Target:  5'- gGGGuaGCUCUGGAgucagagagUCggcCUAGGCCCGGGGa -3'
miRNA:   3'- -CCC--UGAGAUCU---------GGa--GGUCUGGGCCCU- -5'
29137 5' -58.1 NC_006146.1 + 21158 0.7 0.654628
Target:  5'- aGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 24236 0.7 0.654628
Target:  5'- aGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 18080 0.7 0.654628
Target:  5'- aGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 27314 0.7 0.654628
Target:  5'- aGGGAgaCccaagcgaagccaccGGACCUuCCAGGCCCGGGc -3'
miRNA:   3'- -CCCUgaGa--------------UCUGGA-GGUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 112887 0.7 0.663531
Target:  5'- cGGGCUCUgcgcgaAGGCCg--AGACCCGGGc -3'
miRNA:   3'- cCCUGAGA------UCUGGaggUCUGGGCCCu -5'
29137 5' -58.1 NC_006146.1 + 107946 0.7 0.663531
Target:  5'- gGGGACaugaagacagCcgAGACCUCCAgGGCCCuGGAg -3'
miRNA:   3'- -CCCUGa---------Ga-UCUGGAGGU-CUGGGcCCU- -5'
29137 5' -58.1 NC_006146.1 + 83645 0.7 0.672414
Target:  5'- gGGGGCUCUgcgggccAGACCUCCAccUuuGGGu -3'
miRNA:   3'- -CCCUGAGA-------UCUGGAGGUcuGggCCCu -5'
29137 5' -58.1 NC_006146.1 + 71368 0.7 0.6734
Target:  5'- gGGGGCUC-GGACUUCCAGcccuacguuCCCGGc- -3'
miRNA:   3'- -CCCUGAGaUCUGGAGGUCu--------GGGCCcu -5'
29137 5' -58.1 NC_006146.1 + 45955 0.7 0.6734
Target:  5'- gGGGAC-CUcGACgCUCUcuGCCCGGGGc -3'
miRNA:   3'- -CCCUGaGAuCUG-GAGGucUGGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.