miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29138 3' -57.8 NC_006146.1 + 57081 0.66 0.894129
Target:  5'- cGGCGUaGUCCAcGAG-CGGCGcguccuGGCcaGCg -3'
miRNA:   3'- -CCGCAgCAGGU-CUCaGUCGCu-----CCG--CG- -5'
29138 3' -57.8 NC_006146.1 + 170466 0.66 0.894129
Target:  5'- gGGCGU-GUCCcgcgacccgAGGGgcgAGCGGGGgGCu -3'
miRNA:   3'- -CCGCAgCAGG---------UCUCag-UCGCUCCgCG- -5'
29138 3' -57.8 NC_006146.1 + 168603 0.66 0.894129
Target:  5'- gGGCGU-GUCCcgcgacccgAGGGgcgAGCGGGGgGCu -3'
miRNA:   3'- -CCGCAgCAGG---------UCUCag-UCGCUCCgCG- -5'
29138 3' -57.8 NC_006146.1 + 169535 0.66 0.894129
Target:  5'- gGGCGU-GUCCcgcgacccgAGGGgcgAGCGGGGgGCu -3'
miRNA:   3'- -CCGCAgCAGG---------UCUCag-UCGCUCCgCG- -5'
29138 3' -57.8 NC_006146.1 + 167670 0.66 0.894129
Target:  5'- gGGCGU-GUCCcgcgacccgAGGGgcgAGCGGGGgGCu -3'
miRNA:   3'- -CCGCAgCAGG---------UCUCag-UCGCUCCgCG- -5'
29138 3' -57.8 NC_006146.1 + 166870 0.66 0.887608
Target:  5'- aGGaCGUCuUCCGGAuUCacgAGCGGGGCa- -3'
miRNA:   3'- -CC-GCAGcAGGUCUcAG---UCGCUCCGcg -5'
29138 3' -57.8 NC_006146.1 + 146618 0.66 0.887608
Target:  5'- aGCGUCcagcccccggCCAGGGUCA-CGAGGCc- -3'
miRNA:   3'- cCGCAGca--------GGUCUCAGUcGCUCCGcg -5'
29138 3' -57.8 NC_006146.1 + 99868 0.66 0.887608
Target:  5'- cGGCGUacggauguagaCGUCCAGcugaucCGGCGccucugccccccGGGCGCa -3'
miRNA:   3'- -CCGCA-----------GCAGGUCuca---GUCGC------------UCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 118419 0.66 0.887608
Target:  5'- cGGcCGUCGUCCAGucccuGGCcGAGGUccuGCa -3'
miRNA:   3'- -CC-GCAGCAGGUCucag-UCG-CUCCG---CG- -5'
29138 3' -57.8 NC_006146.1 + 124132 0.66 0.880874
Target:  5'- cGGCcagccaucCGcCCGGGGUCGG-GAGGCGa -3'
miRNA:   3'- -CCGca------GCaGGUCUCAGUCgCUCCGCg -5'
29138 3' -57.8 NC_006146.1 + 108149 0.66 0.880874
Target:  5'- gGGUGaCGUUCAuguGGGUCcGCGGGGCu- -3'
miRNA:   3'- -CCGCaGCAGGU---CUCAGuCGCUCCGcg -5'
29138 3' -57.8 NC_006146.1 + 52688 0.66 0.880874
Target:  5'- aGGaCaUCGUCCAGcuccgggcgggaGGUCAG-GGGGCGg -3'
miRNA:   3'- -CC-GcAGCAGGUC------------UCAGUCgCUCCGCg -5'
29138 3' -57.8 NC_006146.1 + 91892 0.66 0.866787
Target:  5'- uGCGg-GUCgGGAGUUGGCacuaguGGGCGCa -3'
miRNA:   3'- cCGCagCAGgUCUCAGUCGc-----UCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 41066 0.66 0.863873
Target:  5'- gGGCcUCGggguggagggaggCCAGGGaCAGCGAGGgGa -3'
miRNA:   3'- -CCGcAGCa------------GGUCUCaGUCGCUCCgCg -5'
29138 3' -57.8 NC_006146.1 + 43571 0.66 0.859443
Target:  5'- cGGCGUacugagCGUucCCGGGG--AGCGGGGCGg -3'
miRNA:   3'- -CCGCA------GCA--GGUCUCagUCGCUCCGCg -5'
29138 3' -57.8 NC_006146.1 + 50844 0.66 0.859443
Target:  5'- uGGCGgUGUCCAGgcuGGUgGGggaugaGAGGCGUu -3'
miRNA:   3'- -CCGCaGCAGGUC---UCAgUCg-----CUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 46038 0.66 0.859443
Target:  5'- aGGCGaCGgggcccUCCAGGGgacgCAGCGAG-UGCc -3'
miRNA:   3'- -CCGCaGC------AGGUCUCa---GUCGCUCcGCG- -5'
29138 3' -57.8 NC_006146.1 + 48820 0.66 0.859443
Target:  5'- gGGCGgUGUCCAGAaaggccuUCAGCugcuccucgGAGGCGg -3'
miRNA:   3'- -CCGCaGCAGGUCUc------AGUCG---------CUCCGCg -5'
29138 3' -57.8 NC_006146.1 + 57903 0.67 0.851906
Target:  5'- cGGCGccUUGUCCAGGacaugCAGa-GGGCGCu -3'
miRNA:   3'- -CCGC--AGCAGGUCUca---GUCgcUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 116806 0.67 0.844182
Target:  5'- gGGCGUgguggagggCGUCCAGGacGUguGCcGGGaCGCg -3'
miRNA:   3'- -CCGCA---------GCAGGUCU--CAguCGcUCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.