Results 21 - 40 of 213 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29139 | 5' | -67.3 | NC_006146.1 | + | 152944 | 0.66 | 0.39561 |
Target: 5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3' miRNA: 3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 156022 | 0.66 | 0.39561 |
Target: 5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3' miRNA: 3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 126248 | 0.66 | 0.39561 |
Target: 5'- gGGaCCCaGGCGCCCGGgcuugggagaCGCCUcucCAGCu -3' miRNA: 3'- gUC-GGG-CCGCGGGCC----------GCGGAc--GUCGu -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 44870 | 0.66 | 0.411621 |
Target: 5'- gAGCCCaGUcccuCCCGGC-CCaGCAGCAg -3' miRNA: 3'- gUCGGGcCGc---GGGCCGcGGaCGUCGU- -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 117159 | 0.66 | 0.411621 |
Target: 5'- -cGCCCGucuuCGcCCCGGCGCagccGCGGCu -3' miRNA: 3'- guCGGGCc---GC-GGGCCGCGga--CGUCGu -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 122629 | 0.66 | 0.411621 |
Target: 5'- gAGgCCGGgGCCCucuuucGCGCCaggacgGCGGCGg -3' miRNA: 3'- gUCgGGCCgCGGGc-----CGCGGa-----CGUCGU- -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 35762 | 0.66 | 0.428027 |
Target: 5'- gCGGaCCCGGCagcgGCCCGGCcaccccccGCC-GgAGCAa -3' miRNA: 3'- -GUC-GGGCCG----CGGGCCG--------CGGaCgUCGU- -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 40071 | 0.66 | 0.428027 |
Target: 5'- aCAGCgucucCCGGCGga-GG-GCCUGCAGCGc -3' miRNA: 3'- -GUCG-----GGCCGCgggCCgCGGACGUCGU- -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 115388 | 0.66 | 0.428027 |
Target: 5'- aGGCCCuGGcCGCUCGcGUGCaggagGCAGCu -3' miRNA: 3'- gUCGGG-CC-GCGGGC-CGCGga---CGUCGu -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 149866 | 0.66 | 0.39561 |
Target: 5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3' miRNA: 3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 42621 | 0.66 | 0.387757 |
Target: 5'- aAGCCUGGgGCUCGGCcGCC-GCcGUg -3' miRNA: 3'- gUCGGGCCgCGGGCCG-CGGaCGuCGu -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 47651 | 0.66 | 0.387757 |
Target: 5'- uGGCCgCGGCccgGCCCaGCGCg-GCGGCc -3' miRNA: 3'- gUCGG-GCCG---CGGGcCGCGgaCGUCGu -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 46973 | 0.66 | 0.411621 |
Target: 5'- cCGGCCCGGCcgccGCCaggaauuGCGCCcgucggaccgGCAGCGg -3' miRNA: 3'- -GUCGGGCCG----CGGgc-----CGCGGa---------CGUCGU- -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 65122 | 0.66 | 0.428027 |
Target: 5'- gAGCCCugGGUGCCCuuGGUGCUcuUGgAGCu -3' miRNA: 3'- gUCGGG--CCGCGGG--CCGCGG--ACgUCGu -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 146788 | 0.66 | 0.39561 |
Target: 5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3' miRNA: 3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 150898 | 0.66 | 0.428027 |
Target: 5'- uGGCCCGGaggaaGCCCuucccGGCGUCgUGgGGCc -3' miRNA: 3'- gUCGGGCCg----CGGG-----CCGCGG-ACgUCGu -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 70994 | 0.67 | 0.342838 |
Target: 5'- gAGCCCGcucuuGCGCCCggggggcagaGGCGCCggauCAGCu -3' miRNA: 3'- gUCGGGC-----CGCGGG----------CCGCGGac--GUCGu -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 143060 | 0.67 | 0.357386 |
Target: 5'- gGGCCUgaaaGGC-CCCGGCGCCUG--GCu -3' miRNA: 3'- gUCGGG----CCGcGGGCCGCGGACguCGu -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 23782 | 0.67 | 0.357386 |
Target: 5'- gCGGCCUGcGCGUCUGGgGCCcGCugAGCc -3' miRNA: 3'- -GUCGGGC-CGCGGGCCgCGGaCG--UCGu -5' |
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29139 | 5' | -67.3 | NC_006146.1 | + | 34937 | 0.67 | 0.350058 |
Target: 5'- gCGGCCCGGCcaCCCccCGCCggagcgggGCAGCGg -3' miRNA: 3'- -GUCGGGCCGc-GGGccGCGGa-------CGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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