miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29139 5' -67.3 NC_006146.1 + 16014 0.68 0.288982
Target:  5'- aGGCCCuGGCcccGCCCGGUGgCCUugggGUAGCu -3'
miRNA:   3'- gUCGGG-CCG---CGGGCCGC-GGA----CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 17603 0.83 0.028506
Target:  5'- uGGCCCGG-GCCUGGUGCCUGgAGCAg -3'
miRNA:   3'- gUCGGGCCgCGGGCCGCGGACgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 18985 0.66 0.428027
Target:  5'- gAGCCCuccGGCGgCCggacccgaggaGGCGCCUG-GGCGa -3'
miRNA:   3'- gUCGGG---CCGCgGG-----------CCGCGGACgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 19092 0.68 0.288982
Target:  5'- aGGCCCuGGCcccGCCCGGUGgCCUugggGUAGCu -3'
miRNA:   3'- gUCGGG-CCG---CGGGCCGC-GGA----CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 19499 0.67 0.335726
Target:  5'- aCAGCugCCGccGCGCCauccccCGCCUGCAGCAg -3'
miRNA:   3'- -GUCG--GGC--CGCGGgcc---GCGGACGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 20019 0.68 0.308364
Target:  5'- gCGGCCCGGUGUgCCaGCGUCccccGCAGCc -3'
miRNA:   3'- -GUCGGGCCGCG-GGcCGCGGa---CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 22063 0.66 0.428027
Target:  5'- gAGCCCuccGGCGgCCggacccgaggaGGCGCCUG-GGCGa -3'
miRNA:   3'- gUCGGG---CCGCgGG-----------CCGCGGACgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 22170 0.68 0.288982
Target:  5'- aGGCCCuGGCcccGCCCGGUGgCCUugggGUAGCu -3'
miRNA:   3'- gUCGGG-CCG---CGGGCCGC-GGA----CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 23097 0.68 0.308364
Target:  5'- gCGGCCCGGUGUgCCaGCGUCccccGCAGCc -3'
miRNA:   3'- -GUCGGGCCGCG-GGcCGCGGa---CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 23782 0.67 0.357386
Target:  5'- gCGGCCUGcGCGUCUGGgGCCcGCugAGCc -3'
miRNA:   3'- -GUCGGGC-CGCGGGCCgCGGaCG--UCGu -5'
29139 5' -67.3 NC_006146.1 + 25141 0.66 0.428027
Target:  5'- gAGCCCuccGGCGgCCggacccgaggaGGCGCCUG-GGCGa -3'
miRNA:   3'- gUCGGG---CCGCgGG-----------CCGCGGACgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 25248 0.68 0.288982
Target:  5'- aGGCCCuGGCcccGCCCGGUGgCCUugggGUAGCu -3'
miRNA:   3'- gUCGGG-CCG---CGGGCCGC-GGA----CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 26175 0.68 0.308364
Target:  5'- gCGGCCCGGUGUgCCaGCGUCccccGCAGCc -3'
miRNA:   3'- -GUCGGGCCGCG-GGcCGCGGa---CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 28219 0.66 0.428027
Target:  5'- gAGCCCuccGGCGgCCggacccgaggaGGCGCCUG-GGCGa -3'
miRNA:   3'- gUCGGG---CCGCgGG-----------CCGCGGACgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 28326 0.68 0.288982
Target:  5'- aGGCCCuGGCcccGCCCGGUGgCCUugggGUAGCu -3'
miRNA:   3'- gUCGGG-CCG---CGGGCCGC-GGA----CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 29253 0.68 0.308364
Target:  5'- gCGGCCCGGUGUgCCaGCGUCccccGCAGCc -3'
miRNA:   3'- -GUCGGGCCGCG-GGcCGCGGa---CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 32831 0.69 0.275992
Target:  5'- cCGGCCCGGCGUCCuugcGGCGgCCUccccccccaugaaGCgGGCGg -3'
miRNA:   3'- -GUCGGGCCGCGGG----CCGC-GGA-------------CG-UCGU- -5'
29139 5' -67.3 NC_006146.1 + 33062 0.7 0.224547
Target:  5'- aGGCCgGGCacagcaguaucuugGCUCGGC-CCUGCGGCu -3'
miRNA:   3'- gUCGGgCCG--------------CGGGCCGcGGACGUCGu -5'
29139 5' -67.3 NC_006146.1 + 33326 0.66 0.403565
Target:  5'- gGGCuCCGGgGUCCgGGUGCUccgggGCAGCc -3'
miRNA:   3'- gUCG-GGCCgCGGG-CCGCGGa----CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 33346 0.7 0.23129
Target:  5'- gCGGaCCCGGCagcgGCCCGGCcaccccccGCCggagcgggGCAGCGg -3'
miRNA:   3'- -GUC-GGGCCG----CGGGCCG--------CGGa-------CGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.