miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29139 5' -67.3 NC_006146.1 + 128192 0.71 0.183188
Target:  5'- gCGGCCCaggggGGCGCCgCGGCGCCggGCcagacgcucuuucGGCGc -3'
miRNA:   3'- -GUCGGG-----CCGCGG-GCCGCGGa-CG-------------UCGU- -5'
29139 5' -67.3 NC_006146.1 + 122033 0.71 0.183617
Target:  5'- aGGCCUGGCGCCUGGagGCCgacgGCuucGCGc -3'
miRNA:   3'- gUCGGGCCGCGGGCCg-CGGa---CGu--CGU- -5'
29139 5' -67.3 NC_006146.1 + 36170 0.71 0.183617
Target:  5'- uGGCCUGGCugGCCUGGUgcaugcauGCCUGCAGg- -3'
miRNA:   3'- gUCGGGCCG--CGGGCCG--------CGGACGUCgu -5'
29139 5' -67.3 NC_006146.1 + 15432 0.71 0.196929
Target:  5'- uGGCCCGGCugcaguccuGCCUGGCGCa-GCAGa- -3'
miRNA:   3'- gUCGGGCCG---------CGGGCCGCGgaCGUCgu -5'
29139 5' -67.3 NC_006146.1 + 105205 0.71 0.20155
Target:  5'- gAGCCgggGGUGCCCGGUGCCUGagacgAGUg -3'
miRNA:   3'- gUCGGg--CCGCGGGCCGCGGACg----UCGu -5'
29139 5' -67.3 NC_006146.1 + 109477 0.71 0.20155
Target:  5'- uCAGCCCGGCcguGCCCGcGUugGCCaccGCAGCc -3'
miRNA:   3'- -GUCGGGCCG---CGGGC-CG--CGGa--CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 12829 0.71 0.211076
Target:  5'- gAGCCCuccGGCGgCCggacccgaggaGGCGCCUGgGGCGa -3'
miRNA:   3'- gUCGGG---CCGCgGG-----------CCGCGGACgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 100694 0.71 0.211076
Target:  5'- gCGGCCCucGGCaCCCGGCGC-UGCGGgGg -3'
miRNA:   3'- -GUCGGG--CCGcGGGCCGCGgACGUCgU- -5'
29139 5' -67.3 NC_006146.1 + 48041 0.7 0.215982
Target:  5'- cCGGCUCGGguCGUCCaGCGCCccggGCAGCGu -3'
miRNA:   3'- -GUCGGGCC--GCGGGcCGCGGa---CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 99593 0.7 0.215982
Target:  5'- gGGCuuGGgGCCgCGGUGCuCUGCguAGCAc -3'
miRNA:   3'- gUCGggCCgCGG-GCCGCG-GACG--UCGU- -5'
29139 5' -67.3 NC_006146.1 + 53363 0.7 0.215982
Target:  5'- aGGuCuuGGCugGCCCGGCGCUUGCucGCGu -3'
miRNA:   3'- gUC-GggCCG--CGGGCCGCGGACGu-CGU- -5'
29139 5' -67.3 NC_006146.1 + 14843 0.7 0.220986
Target:  5'- gGGCCCGGgGCCgCGGgagGCCgaggggGCAGCc -3'
miRNA:   3'- gUCGGGCCgCGG-GCCg--CGGa-----CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 39826 0.7 0.220986
Target:  5'- aCGGCCCGGCgGCCuCGGCcgcacaguggGCCgGCGGgGg -3'
miRNA:   3'- -GUCGGGCCG-CGG-GCCG----------CGGaCGUCgU- -5'
29139 5' -67.3 NC_006146.1 + 33062 0.7 0.224547
Target:  5'- aGGCCgGGCacagcaguaucuugGCUCGGC-CCUGCGGCu -3'
miRNA:   3'- gUCGGgCCG--------------CGGGCCGcGGACGUCGu -5'
29139 5' -67.3 NC_006146.1 + 33904 0.7 0.225574
Target:  5'- gCGGaCCCGGCagcgGCCCGGCcacccccGCCggagcgggGCAGCGg -3'
miRNA:   3'- -GUC-GGGCCG----CGGGCCG-------CGGa-------CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 60765 0.7 0.229719
Target:  5'- aUAGCCCugcugcgcgugcggGGCuuaauGCCCGGCGUCUGCcuGGCc -3'
miRNA:   3'- -GUCGGG--------------CCG-----CGGGCCGCGGACG--UCGu -5'
29139 5' -67.3 NC_006146.1 + 34368 0.7 0.23129
Target:  5'- gCGGaCCCGGCagcgGCCCGGCcaccccccGCCggagcgggGCAGCGg -3'
miRNA:   3'- -GUC-GGGCCG----CGGGCCG--------CGGa-------CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 34554 0.7 0.23129
Target:  5'- gCGGaCCCGGCagcgGCCCGGCcaccccccGCCggagcgggGCAGCGg -3'
miRNA:   3'- -GUC-GGGCCG----CGGGCCG--------CGGa-------CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 34647 0.7 0.23129
Target:  5'- gCGGaCCCGGCagcgGCCCGGCcaccccccGCCggagcgggGCAGCGg -3'
miRNA:   3'- -GUC-GGGCCG----CGGGCCG--------CGGa-------CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 34740 0.7 0.23129
Target:  5'- gCGGaCCCGGCagcgGCCCGGCcaccccccGCCggagcgggGCAGCGg -3'
miRNA:   3'- -GUC-GGGCCG----CGGGCCG--------CGGa-------CGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.