miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29139 5' -67.3 NC_006146.1 + 117159 0.66 0.411621
Target:  5'- -cGCCCGucuuCGcCCCGGCGCagccGCGGCu -3'
miRNA:   3'- guCGGGCc---GC-GGGCCGCGga--CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 122629 0.66 0.411621
Target:  5'- gAGgCCGGgGCCCucuuucGCGCCaggacgGCGGCGg -3'
miRNA:   3'- gUCgGGCCgCGGGc-----CGCGGa-----CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 44870 0.66 0.411621
Target:  5'- gAGCCCaGUcccuCCCGGC-CCaGCAGCAg -3'
miRNA:   3'- gUCGGGcCGc---GGGCCGcGGaCGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 105084 0.66 0.403565
Target:  5'- gGGCUCGaGCGCCUGGCGCa-GCucgucucuGGCc -3'
miRNA:   3'- gUCGGGC-CGCGGGCCGCGgaCG--------UCGu -5'
29139 5' -67.3 NC_006146.1 + 33326 0.66 0.403565
Target:  5'- gGGCuCCGGgGUCCgGGUGCUccgggGCAGCc -3'
miRNA:   3'- gUCG-GGCCgCGGG-CCGCGGa----CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 155864 0.66 0.403565
Target:  5'- aGGCCCGGCggGCCCuggccaGGCGCCccucccuGGCAa -3'
miRNA:   3'- gUCGGGCCG--CGGG------CCGCGGacg----UCGU- -5'
29139 5' -67.3 NC_006146.1 + 126248 0.66 0.39561
Target:  5'- gGGaCCCaGGCGCCCGGgcuugggagaCGCCUcucCAGCu -3'
miRNA:   3'- gUC-GGG-CCGCGGGCC----------GCGGAc--GUCGu -5'
29139 5' -67.3 NC_006146.1 + 156022 0.66 0.39561
Target:  5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3'
miRNA:   3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5'
29139 5' -67.3 NC_006146.1 + 152944 0.66 0.39561
Target:  5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3'
miRNA:   3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5'
29139 5' -67.3 NC_006146.1 + 149866 0.66 0.39561
Target:  5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3'
miRNA:   3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5'
29139 5' -67.3 NC_006146.1 + 146788 0.66 0.39561
Target:  5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3'
miRNA:   3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5'
29139 5' -67.3 NC_006146.1 + 93586 0.66 0.387757
Target:  5'- uCAGCCUGGgcaugcgcgaccCGCCgGGCuCCUGgGGCu -3'
miRNA:   3'- -GUCGGGCC------------GCGGgCCGcGGACgUCGu -5'
29139 5' -67.3 NC_006146.1 + 42621 0.66 0.387757
Target:  5'- aAGCCUGGgGCUCGGCcGCC-GCcGUg -3'
miRNA:   3'- gUCGGGCCgCGGGCCG-CGGaCGuCGu -5'
29139 5' -67.3 NC_006146.1 + 44104 0.66 0.387757
Target:  5'- uCGGgCCGcGCGCUCGGCGCCgaacccggaUGCAu-- -3'
miRNA:   3'- -GUCgGGC-CGCGGGCCGCGG---------ACGUcgu -5'
29139 5' -67.3 NC_006146.1 + 141309 0.66 0.387757
Target:  5'- uCAGCCUGGCugagccCCCGGgGuCCUGUcccAGCu -3'
miRNA:   3'- -GUCGGGCCGc-----GGGCCgC-GGACG---UCGu -5'
29139 5' -67.3 NC_006146.1 + 47651 0.66 0.387757
Target:  5'- uGGCCgCGGCccgGCCCaGCGCg-GCGGCc -3'
miRNA:   3'- gUCGG-GCCG---CGGGcCGCGgaCGUCGu -5'
29139 5' -67.3 NC_006146.1 + 15016 0.67 0.38232
Target:  5'- -uGCCCuguuugccagggaggGGCGCCUGGCcagggcccgccggGCCUGCgaggaGGCAc -3'
miRNA:   3'- guCGGG---------------CCGCGGGCCG-------------CGGACG-----UCGU- -5'
29139 5' -67.3 NC_006146.1 + 64734 0.67 0.380006
Target:  5'- gAGCCCuGCGuUCUGGaugGCCUGCAuGCGa -3'
miRNA:   3'- gUCGGGcCGC-GGGCCg--CGGACGU-CGU- -5'
29139 5' -67.3 NC_006146.1 + 131571 0.67 0.380006
Target:  5'- uGGUuuGGUGaCUGGUGCUUGUGGCGg -3'
miRNA:   3'- gUCGggCCGCgGGCCGCGGACGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 143709 0.67 0.380006
Target:  5'- uUAGCCUGGgGCCuCGGaggGCCUGgAGg- -3'
miRNA:   3'- -GUCGGGCCgCGG-GCCg--CGGACgUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.