miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29139 5' -67.3 NC_006146.1 + 157351 1.07 0.000419
Target:  5'- gCAGCCCGGCGCCCGGCGCCUGCAGCAg -3'
miRNA:   3'- -GUCGGGCCGCGGGCCGCGGACGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 17603 0.83 0.028506
Target:  5'- uGGCCCGG-GCCUGGUGCCUGgAGCAg -3'
miRNA:   3'- gUCGGGCCgCGGGCCGCGGACgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 114228 0.79 0.048674
Target:  5'- gCAGCCCGGCGaUCCGGCGUUgcagacgGCGGCGa -3'
miRNA:   3'- -GUCGGGCCGC-GGGCCGCGGa------CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 42704 0.78 0.059575
Target:  5'- uGGCCCGGCGCCgCGGCGCCccccuggGCcGCc -3'
miRNA:   3'- gUCGGGCCGCGG-GCCGCGGa------CGuCGu -5'
29139 5' -67.3 NC_006146.1 + 123710 0.77 0.069266
Target:  5'- gGGCCUGGCGCUCGGgGCg-GCGGCGg -3'
miRNA:   3'- gUCGGGCCGCGGGCCgCGgaCGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 62020 0.74 0.113678
Target:  5'- uGGCCgCGGCGCUCGGCcUCUGCcGCAu -3'
miRNA:   3'- gUCGG-GCCGCGGGCCGcGGACGuCGU- -5'
29139 5' -67.3 NC_006146.1 + 33543 0.74 0.122303
Target:  5'- -uGCCCGGCuuGCCUGGC-CCUGguGCu -3'
miRNA:   3'- guCGGGCCG--CGGGCCGcGGACguCGu -5'
29139 5' -67.3 NC_006146.1 + 114323 0.74 0.125311
Target:  5'- gGGCUCGGCGCCCGGCcgccCCUGaCGGa- -3'
miRNA:   3'- gUCGGGCCGCGGGCCGc---GGAC-GUCgu -5'
29139 5' -67.3 NC_006146.1 + 91830 0.74 0.125311
Target:  5'- gCAGCCgucauCGcauGCGUCCGGCGCCUGCGGa- -3'
miRNA:   3'- -GUCGG-----GC---CGCGGGCCGCGGACGUCgu -5'
29139 5' -67.3 NC_006146.1 + 113684 0.73 0.148353
Target:  5'- gGGCCCGG-GCCCGGCcuccgGCCcggggacgGCGGCGg -3'
miRNA:   3'- gUCGGGCCgCGGGCCG-----CGGa-------CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 745 0.72 0.167109
Target:  5'- uCAGCCCccggccGGCGCCgCcGCGCgUGCAGCc -3'
miRNA:   3'- -GUCGGG------CCGCGG-GcCGCGgACGUCGu -5'
29139 5' -67.3 NC_006146.1 + 3540 0.72 0.167109
Target:  5'- uCAGCCCccggccGGCGCCgCcGCGCgUGCAGCc -3'
miRNA:   3'- -GUCGGG------CCGCGG-GcCGCGgACGUCGu -5'
29139 5' -67.3 NC_006146.1 + 1676 0.72 0.167109
Target:  5'- uCAGCCCccggccGGCGCCgCcGCGCgUGCAGCc -3'
miRNA:   3'- -GUCGGG------CCGCGG-GcCGCGgACGUCGu -5'
29139 5' -67.3 NC_006146.1 + 2608 0.72 0.167109
Target:  5'- uCAGCCCccggccGGCGCCgCcGCGCgUGCAGCc -3'
miRNA:   3'- -GUCGGG------CCGCGG-GcCGCGgACGUCGu -5'
29139 5' -67.3 NC_006146.1 + 168224 0.72 0.171107
Target:  5'- -uGgCCGGCGggaggggCCGGCGCCUGCAGgGg -3'
miRNA:   3'- guCgGGCCGCg------GGCCGCGGACGUCgU- -5'
29139 5' -67.3 NC_006146.1 + 169156 0.72 0.171107
Target:  5'- -uGgCCGGCGggaggggCCGGCGCCUGCAGgGg -3'
miRNA:   3'- guCgGGCCGCg------GGCCGCGGACGUCgU- -5'
29139 5' -67.3 NC_006146.1 + 41777 0.72 0.171107
Target:  5'- aGGCCCuGCGCCCgGGCGCCcGCucucaGGCc -3'
miRNA:   3'- gUCGGGcCGCGGG-CCGCGGaCG-----UCGu -5'
29139 5' -67.3 NC_006146.1 + 167292 0.72 0.171107
Target:  5'- -uGgCCGGCGggaggggCCGGCGCCUGCAGgGg -3'
miRNA:   3'- guCgGGCCGCg------GGCCGCGGACGUCgU- -5'
29139 5' -67.3 NC_006146.1 + 53327 0.72 0.17519
Target:  5'- gAGCCCgaGGagGCCCGGCgGCCgcgggGCGGCGu -3'
miRNA:   3'- gUCGGG--CCg-CGGGCCG-CGGa----CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 96346 0.72 0.17936
Target:  5'- aCAGCCCGGUGCa--GCGCCUGUAcCAg -3'
miRNA:   3'- -GUCGGGCCGCGggcCGCGGACGUcGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.