miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29139 5' -67.3 NC_006146.1 + 157351 1.07 0.000419
Target:  5'- gCAGCCCGGCGCCCGGCGCCUGCAGCAg -3'
miRNA:   3'- -GUCGGGCCGCGGGCCGCGGACGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 60765 0.7 0.229719
Target:  5'- aUAGCCCugcugcgcgugcggGGCuuaauGCCCGGCGUCUGCcuGGCc -3'
miRNA:   3'- -GUCGGG--------------CCG-----CGGGCCGCGGACG--UCGu -5'
29139 5' -67.3 NC_006146.1 + 135178 0.69 0.258826
Target:  5'- gAGCUCGGgGCCgGGgGCCgGguGCc -3'
miRNA:   3'- gUCGGGCCgCGGgCCgCGGaCguCGu -5'
29139 5' -67.3 NC_006146.1 + 85927 0.66 0.428027
Target:  5'- --cCCUGGgGCCUGGaugGCCUGCGGg- -3'
miRNA:   3'- gucGGGCCgCGGGCCg--CGGACGUCgu -5'
29139 5' -67.3 NC_006146.1 + 113684 0.73 0.148353
Target:  5'- gGGCCCGG-GCCCGGCcuccgGCCcggggacgGCGGCGg -3'
miRNA:   3'- gUCGGGCCgCGGGCCG-----CGGa-------CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 167292 0.72 0.171107
Target:  5'- -uGgCCGGCGggaggggCCGGCGCCUGCAGgGg -3'
miRNA:   3'- guCgGGCCGCg------GGCCGCGGACGUCgU- -5'
29139 5' -67.3 NC_006146.1 + 169156 0.72 0.171107
Target:  5'- -uGgCCGGCGggaggggCCGGCGCCUGCAGgGg -3'
miRNA:   3'- guCgGGCCGCg------GGCCGCGGACGUCgU- -5'
29139 5' -67.3 NC_006146.1 + 53327 0.72 0.17519
Target:  5'- gAGCCCgaGGagGCCCGGCgGCCgcgggGCGGCGu -3'
miRNA:   3'- gUCGGG--CCg-CGGGCCG-CGGa----CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 36170 0.71 0.183617
Target:  5'- uGGCCUGGCugGCCUGGUgcaugcauGCCUGCAGg- -3'
miRNA:   3'- gUCGGGCCG--CGGGCCG--------CGGACGUCgu -5'
29139 5' -67.3 NC_006146.1 + 33062 0.7 0.224547
Target:  5'- aGGCCgGGCacagcaguaucuugGCUCGGC-CCUGCGGCu -3'
miRNA:   3'- gUCGGgCCG--------------CGGGCCGcGGACGUCGu -5'
29139 5' -67.3 NC_006146.1 + 53363 0.7 0.215982
Target:  5'- aGGuCuuGGCugGCCCGGCGCUUGCucGCGu -3'
miRNA:   3'- gUC-GggCCG--CGGGCCGCGGACGu-CGU- -5'
29139 5' -67.3 NC_006146.1 + 128192 0.71 0.183188
Target:  5'- gCGGCCCaggggGGCGCCgCGGCGCCggGCcagacgcucuuucGGCGc -3'
miRNA:   3'- -GUCGGG-----CCGCGG-GCCGCGGa-CG-------------UCGU- -5'
29139 5' -67.3 NC_006146.1 + 62020 0.74 0.113678
Target:  5'- uGGCCgCGGCGCUCGGCcUCUGCcGCAu -3'
miRNA:   3'- gUCGG-GCCGCGGGCCGcGGACGuCGU- -5'
29139 5' -67.3 NC_006146.1 + 99593 0.7 0.215982
Target:  5'- gGGCuuGGgGCCgCGGUGCuCUGCguAGCAc -3'
miRNA:   3'- gUCGggCCgCGG-GCCGCG-GACG--UCGU- -5'
29139 5' -67.3 NC_006146.1 + 33543 0.74 0.122303
Target:  5'- -uGCCCGGCuuGCCUGGC-CCUGguGCu -3'
miRNA:   3'- guCGGGCCG--CGGGCCGcGGACguCGu -5'
29139 5' -67.3 NC_006146.1 + 96346 0.72 0.17936
Target:  5'- aCAGCCCGGUGCa--GCGCCUGUAcCAg -3'
miRNA:   3'- -GUCGGGCCGCGggcCGCGGACGUcGU- -5'
29139 5' -67.3 NC_006146.1 + 48041 0.7 0.215982
Target:  5'- cCGGCUCGGguCGUCCaGCGCCccggGCAGCGu -3'
miRNA:   3'- -GUCGGGCC--GCGGGcCGCGGa---CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 167644 0.69 0.247503
Target:  5'- gGGCCCGGCgcguGCCgGGgGCCcgGgGGCGu -3'
miRNA:   3'- gUCGGGCCG----CGGgCCgCGGa-CgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 91830 0.74 0.125311
Target:  5'- gCAGCCgucauCGcauGCGUCCGGCGCCUGCGGa- -3'
miRNA:   3'- -GUCGG-----GC---CGCGGGCCGCGGACGUCgu -5'
29139 5' -67.3 NC_006146.1 + 168224 0.72 0.171107
Target:  5'- -uGgCCGGCGggaggggCCGGCGCCUGCAGgGg -3'
miRNA:   3'- guCgGGCCGCg------GGCCGCGGACGUCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.