miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29139 5' -67.3 NC_006146.1 + 111860 0.67 0.357386
Target:  5'- uCGGCCCGcuGCGCCCucacCGCCaGCGGUg -3'
miRNA:   3'- -GUCGGGC--CGCGGGcc--GCGGaCGUCGu -5'
29139 5' -67.3 NC_006146.1 + 42621 0.66 0.387757
Target:  5'- aAGCCUGGgGCUCGGCcGCC-GCcGUg -3'
miRNA:   3'- gUCGGGCCgCGGGCCG-CGGaCGuCGu -5'
29139 5' -67.3 NC_006146.1 + 15016 0.67 0.38232
Target:  5'- -uGCCCuguuugccagggaggGGCGCCUGGCcagggcccgccggGCCUGCgaggaGGCAc -3'
miRNA:   3'- guCGGG---------------CCGCGGGCCG-------------CGGACG-----UCGU- -5'
29139 5' -67.3 NC_006146.1 + 143709 0.67 0.380006
Target:  5'- uUAGCCUGGgGCCuCGGaggGCCUGgAGg- -3'
miRNA:   3'- -GUCGGGCCgCGG-GCCg--CGGACgUCgu -5'
29139 5' -67.3 NC_006146.1 + 10833 0.67 0.379237
Target:  5'- gGGCCacaGGUGCCUGacuGUGCCgcuccucUGCGGCAu -3'
miRNA:   3'- gUCGGg--CCGCGGGC---CGCGG-------ACGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 126405 0.67 0.372361
Target:  5'- --cCCCGGaCGCCCGGgGUC-GCgAGCAc -3'
miRNA:   3'- gucGGGCC-GCGGGCCgCGGaCG-UCGU- -5'
29139 5' -67.3 NC_006146.1 + 137662 0.67 0.372361
Target:  5'- gCGGCCCGGCGgacccgCCGGCGgCCaccCGGCu -3'
miRNA:   3'- -GUCGGGCCGCg-----GGCCGC-GGac-GUCGu -5'
29139 5' -67.3 NC_006146.1 + 167931 0.67 0.362578
Target:  5'- uGGCCguacucguaccucgCGGUGUCCaGCGCCUGguGUc -3'
miRNA:   3'- gUCGG--------------GCCGCGGGcCGCGGACguCGu -5'
29139 5' -67.3 NC_006146.1 + 61291 0.67 0.359605
Target:  5'- gGGCCugucgcguguuugCGGCGCgCGGCGuCCUGCccggguggccuagccGGCGa -3'
miRNA:   3'- gUCGG-------------GCCGCGgGCCGC-GGACG---------------UCGU- -5'
29139 5' -67.3 NC_006146.1 + 146788 0.66 0.39561
Target:  5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3'
miRNA:   3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5'
29139 5' -67.3 NC_006146.1 + 149866 0.66 0.39561
Target:  5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3'
miRNA:   3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5'
29139 5' -67.3 NC_006146.1 + 152944 0.66 0.39561
Target:  5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3'
miRNA:   3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5'
29139 5' -67.3 NC_006146.1 + 115388 0.66 0.428027
Target:  5'- aGGCCCuGGcCGCUCGcGUGCaggagGCAGCu -3'
miRNA:   3'- gUCGGG-CC-GCGGGC-CGCGga---CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 40071 0.66 0.428027
Target:  5'- aCAGCgucucCCGGCGga-GG-GCCUGCAGCGc -3'
miRNA:   3'- -GUCG-----GGCCGCgggCCgCGGACGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 35762 0.66 0.428027
Target:  5'- gCGGaCCCGGCagcgGCCCGGCcaccccccGCC-GgAGCAa -3'
miRNA:   3'- -GUC-GGGCCG----CGGGCCG--------CGGaCgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 122629 0.66 0.411621
Target:  5'- gAGgCCGGgGCCCucuuucGCGCCaggacgGCGGCGg -3'
miRNA:   3'- gUCgGGCCgCGGGc-----CGCGGa-----CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 117159 0.66 0.411621
Target:  5'- -cGCCCGucuuCGcCCCGGCGCagccGCGGCu -3'
miRNA:   3'- guCGGGCc---GC-GGGCCGCGga--CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 44870 0.66 0.411621
Target:  5'- gAGCCCaGUcccuCCCGGC-CCaGCAGCAg -3'
miRNA:   3'- gUCGGGcCGc---GGGCCGcGGaCGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 126248 0.66 0.39561
Target:  5'- gGGaCCCaGGCGCCCGGgcuugggagaCGCCUcucCAGCu -3'
miRNA:   3'- gUC-GGG-CCGCGGGCC----------GCGGAc--GUCGu -5'
29139 5' -67.3 NC_006146.1 + 156022 0.66 0.39561
Target:  5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3'
miRNA:   3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.