miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29139 5' -67.3 NC_006146.1 + 168112 0.65 0.43386
Target:  5'- aGGCCUgcuGGCGCCUGGCGUCUucccugacauccggGCuugGGCc -3'
miRNA:   3'- gUCGGG---CCGCGGGCCGCGGA--------------CG---UCGu -5'
29139 5' -67.3 NC_006146.1 + 42621 0.66 0.387757
Target:  5'- aAGCCUGGgGCUCGGCcGCC-GCcGUg -3'
miRNA:   3'- gUCGGGCCgCGGGCCG-CGGaCGuCGu -5'
29139 5' -67.3 NC_006146.1 + 44104 0.66 0.387757
Target:  5'- uCGGgCCGcGCGCUCGGCGCCgaacccggaUGCAu-- -3'
miRNA:   3'- -GUCgGGC-CGCGGGCCGCGG---------ACGUcgu -5'
29139 5' -67.3 NC_006146.1 + 85927 0.66 0.428027
Target:  5'- --cCCUGGgGCCUGGaugGCCUGCGGg- -3'
miRNA:   3'- gucGGGCCgCGGGCCg--CGGACGUCgu -5'
29139 5' -67.3 NC_006146.1 + 47651 0.66 0.387757
Target:  5'- uGGCCgCGGCccgGCCCaGCGCg-GCGGCc -3'
miRNA:   3'- gUCGG-GCCG---CGGGcCGCGgaCGUCGu -5'
29139 5' -67.3 NC_006146.1 + 93586 0.66 0.387757
Target:  5'- uCAGCCUGGgcaugcgcgaccCGCCgGGCuCCUGgGGCu -3'
miRNA:   3'- -GUCGGGCC------------GCGGgCCGcGGACgUCGu -5'
29139 5' -67.3 NC_006146.1 + 141309 0.66 0.387757
Target:  5'- uCAGCCUGGCugagccCCCGGgGuCCUGUcccAGCu -3'
miRNA:   3'- -GUCGGGCCGc-----GGGCCgC-GGACG---UCGu -5'
29139 5' -67.3 NC_006146.1 + 33326 0.66 0.403565
Target:  5'- gGGCuCCGGgGUCCgGGUGCUccgggGCAGCc -3'
miRNA:   3'- gUCG-GGCCgCGGG-CCGCGGa----CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 105084 0.66 0.403565
Target:  5'- gGGCUCGaGCGCCUGGCGCa-GCucgucucuGGCc -3'
miRNA:   3'- gUCGGGC-CGCGGGCCGCGgaCG--------UCGu -5'
29139 5' -67.3 NC_006146.1 + 146788 0.66 0.39561
Target:  5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3'
miRNA:   3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5'
29139 5' -67.3 NC_006146.1 + 149866 0.66 0.39561
Target:  5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3'
miRNA:   3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5'
29139 5' -67.3 NC_006146.1 + 152944 0.66 0.39561
Target:  5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3'
miRNA:   3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5'
29139 5' -67.3 NC_006146.1 + 115388 0.66 0.428027
Target:  5'- aGGCCCuGGcCGCUCGcGUGCaggagGCAGCu -3'
miRNA:   3'- gUCGGG-CC-GCGGGC-CGCGga---CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 40071 0.66 0.428027
Target:  5'- aCAGCgucucCCGGCGga-GG-GCCUGCAGCGc -3'
miRNA:   3'- -GUCG-----GGCCGCgggCCgCGGACGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 35762 0.66 0.428027
Target:  5'- gCGGaCCCGGCagcgGCCCGGCcaccccccGCC-GgAGCAa -3'
miRNA:   3'- -GUC-GGGCCG----CGGGCCG--------CGGaCgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 122629 0.66 0.411621
Target:  5'- gAGgCCGGgGCCCucuuucGCGCCaggacgGCGGCGg -3'
miRNA:   3'- gUCgGGCCgCGGGc-----CGCGGa-----CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 117159 0.66 0.411621
Target:  5'- -cGCCCGucuuCGcCCCGGCGCagccGCGGCu -3'
miRNA:   3'- guCGGGCc---GC-GGGCCGCGga--CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 44870 0.66 0.411621
Target:  5'- gAGCCCaGUcccuCCCGGC-CCaGCAGCAg -3'
miRNA:   3'- gUCGGGcCGc---GGGCCGcGGaCGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 126248 0.66 0.39561
Target:  5'- gGGaCCCaGGCGCCCGGgcuugggagaCGCCUcucCAGCu -3'
miRNA:   3'- gUC-GGG-CCGCGGGCC----------GCGGAc--GUCGu -5'
29139 5' -67.3 NC_006146.1 + 156022 0.66 0.39561
Target:  5'- aGGCCUGGgGCCuCGGaggGCCUGgAGg- -3'
miRNA:   3'- gUCGGGCCgCGG-GCCg--CGGACgUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.