miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29139 5' -67.3 NC_006146.1 + 597 0.68 0.321828
Target:  5'- gCGGCCCGGCGCCa-GC-CCUGCc--- -3'
miRNA:   3'- -GUCGGGCCGCGGgcCGcGGACGucgu -5'
29139 5' -67.3 NC_006146.1 + 745 0.72 0.167109
Target:  5'- uCAGCCCccggccGGCGCCgCcGCGCgUGCAGCc -3'
miRNA:   3'- -GUCGGG------CCGCGG-GcCGCGgACGUCGu -5'
29139 5' -67.3 NC_006146.1 + 1528 0.68 0.321828
Target:  5'- gCGGCCCGGCGCCa-GC-CCUGCc--- -3'
miRNA:   3'- -GUCGGGCCGCGGgcCGcGGACGucgu -5'
29139 5' -67.3 NC_006146.1 + 1676 0.72 0.167109
Target:  5'- uCAGCCCccggccGGCGCCgCcGCGCgUGCAGCc -3'
miRNA:   3'- -GUCGGG------CCGCGG-GcCGCGgACGUCGu -5'
29139 5' -67.3 NC_006146.1 + 2460 0.68 0.321828
Target:  5'- gCGGCCCGGCGCCa-GC-CCUGCc--- -3'
miRNA:   3'- -GUCGGGCCGCGGgcCGcGGACGucgu -5'
29139 5' -67.3 NC_006146.1 + 2608 0.72 0.167109
Target:  5'- uCAGCCCccggccGGCGCCgCcGCGCgUGCAGCc -3'
miRNA:   3'- -GUCGGG------CCGCGG-GcCGCGgACGUCGu -5'
29139 5' -67.3 NC_006146.1 + 2775 0.69 0.264058
Target:  5'- aAGCCCGGaugucagggaagaCGCCaGGCGCCaGCAGg- -3'
miRNA:   3'- gUCGGGCC-------------GCGGgCCGCGGaCGUCgu -5'
29139 5' -67.3 NC_006146.1 + 3379 0.67 0.350058
Target:  5'- aCGGCCgCGGCGUCCuacaGGC-CCUGaAGCGu -3'
miRNA:   3'- -GUCGG-GCCGCGGG----CCGcGGACgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 3392 0.68 0.321828
Target:  5'- gCGGCCCGGCGCCa-GC-CCUGCc--- -3'
miRNA:   3'- -GUCGGGCCGCGGgcCGcGGACGucgu -5'
29139 5' -67.3 NC_006146.1 + 3540 0.72 0.167109
Target:  5'- uCAGCCCccggccGGCGCCgCcGCGCgUGCAGCc -3'
miRNA:   3'- -GUCGGG------CCGCGG-GcCGCGgACGUCGu -5'
29139 5' -67.3 NC_006146.1 + 10833 0.67 0.379237
Target:  5'- gGGCCacaGGUGCCUGacuGUGCCgcuccucUGCGGCAu -3'
miRNA:   3'- gUCGGg--CCGCGGGC---CGCGG-------ACGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 11357 0.68 0.321828
Target:  5'- gGGCCUGGCGCa-GGCGCUgcgcGUcaGGCAg -3'
miRNA:   3'- gUCGGGCCGCGggCCGCGGa---CG--UCGU- -5'
29139 5' -67.3 NC_006146.1 + 12829 0.71 0.211076
Target:  5'- gAGCCCuccGGCGgCCggacccgaggaGGCGCCUGgGGCGa -3'
miRNA:   3'- gUCGGG---CCGCgGG-----------CCGCGGACgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 12937 0.68 0.288982
Target:  5'- aGGCCCuGGCcccGCCCGGUGgCCUugggGUAGCu -3'
miRNA:   3'- gUCGGG-CCG---CGGGCCGC-GGA----CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 13550 0.69 0.270569
Target:  5'- -uGCUgcaGGCGCCgGGCGCCggGCuGCGc -3'
miRNA:   3'- guCGGg--CCGCGGgCCGCGGa-CGuCGU- -5'
29139 5' -67.3 NC_006146.1 + 13864 0.68 0.308364
Target:  5'- gCGGCCCGGUGUgCCaGCGUCccccGCAGCc -3'
miRNA:   3'- -GUCGGGCCGCG-GGcCGCGGa---CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 14843 0.7 0.220986
Target:  5'- gGGCCCGGgGCCgCGGgagGCCgaggggGCAGCc -3'
miRNA:   3'- gUCGGGCCgCGG-GCCg--CGGa-----CGUCGu -5'
29139 5' -67.3 NC_006146.1 + 15016 0.67 0.38232
Target:  5'- -uGCCCuguuugccagggaggGGCGCCUGGCcagggcccgccggGCCUGCgaggaGGCAc -3'
miRNA:   3'- guCGGG---------------CCGCGGGCCG-------------CGGACG-----UCGU- -5'
29139 5' -67.3 NC_006146.1 + 15432 0.71 0.196929
Target:  5'- uGGCCCGGCugcaguccuGCCUGGCGCa-GCAGa- -3'
miRNA:   3'- gUCGGGCCG---------CGGGCCGCGgaCGUCgu -5'
29139 5' -67.3 NC_006146.1 + 15908 0.66 0.428027
Target:  5'- gAGCCCuccGGCGgCCggacccgaggaGGCGCCUG-GGCGa -3'
miRNA:   3'- gUCGGG---CCGCgGG-----------CCGCGGACgUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.