miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29139 5' -67.3 NC_006146.1 + 170429 0.68 0.288352
Target:  5'- gGGUCCcgcGGgGCCCGGCGCgUGCcgggggacccgggGGCGu -3'
miRNA:   3'- gUCGGG---CCgCGGGCCGCGgACG-------------UCGU- -5'
29139 5' -67.3 NC_006146.1 + 169981 0.67 0.335726
Target:  5'- aGGCCggCGcGCGCCCGGgGUCccgggggGCGGCGc -3'
miRNA:   3'- gUCGG--GC-CGCGGGCCgCGGa------CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 169498 0.68 0.288352
Target:  5'- gGGUCCcgcGGgGCCCGGCGCgUGCcgggggacccgggGGCGu -3'
miRNA:   3'- gUCGGG---CCgCGGGCCGCGgACG-------------UCGU- -5'
29139 5' -67.3 NC_006146.1 + 169156 0.72 0.171107
Target:  5'- -uGgCCGGCGggaggggCCGGCGCCUGCAGgGg -3'
miRNA:   3'- guCgGGCCGCg------GGCCGCGGACGUCgU- -5'
29139 5' -67.3 NC_006146.1 + 169049 0.67 0.335726
Target:  5'- aGGCCggCGcGCGCCCGGgGUCccgggggGCGGCGc -3'
miRNA:   3'- gUCGG--GC-CGCGGGCCgCGGa------CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 168566 0.68 0.288352
Target:  5'- gGGUCCcgcGGgGCCCGGCGCgUGCcgggggacccgggGGCGu -3'
miRNA:   3'- gUCGGG---CCgCGGGCCGCGgACG-------------UCGU- -5'
29139 5' -67.3 NC_006146.1 + 168224 0.72 0.171107
Target:  5'- -uGgCCGGCGggaggggCCGGCGCCUGCAGgGg -3'
miRNA:   3'- guCgGGCCGCg------GGCCGCGGACGUCgU- -5'
29139 5' -67.3 NC_006146.1 + 168117 0.67 0.335726
Target:  5'- aGGCCggCGcGCGCCCGGgGUCccgggggGCGGCGc -3'
miRNA:   3'- gUCGG--GC-CGCGGGCCgCGGa------CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 168112 0.65 0.43386
Target:  5'- aGGCCUgcuGGCGCCUGGCGUCUucccugacauccggGCuugGGCc -3'
miRNA:   3'- gUCGGG---CCGCGGGCCGCGGA--------------CG---UCGu -5'
29139 5' -67.3 NC_006146.1 + 167931 0.67 0.362578
Target:  5'- uGGCCguacucguaccucgCGGUGUCCaGCGCCUGguGUc -3'
miRNA:   3'- gUCGG--------------GCCGCGGGcCGCGGACguCGu -5'
29139 5' -67.3 NC_006146.1 + 167644 0.69 0.247503
Target:  5'- gGGCCCGGCgcguGCCgGGgGCCcgGgGGCGu -3'
miRNA:   3'- gUCGGGCCG----CGGgCCgCGGa-CgUCGU- -5'
29139 5' -67.3 NC_006146.1 + 167292 0.72 0.171107
Target:  5'- -uGgCCGGCGggaggggCCGGCGCCUGCAGgGg -3'
miRNA:   3'- guCgGGCCGCg------GGCCGCGGACGUCgU- -5'
29139 5' -67.3 NC_006146.1 + 167185 0.67 0.335726
Target:  5'- aGGCCggCGcGCGCCCGGgGUCccgggggGCGGCGc -3'
miRNA:   3'- gUCGG--GC-CGCGGGCCgCGGa------CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 160038 0.68 0.328723
Target:  5'- aAGCCCGGCuCCaCGGUgauGCCgcagaggaGCGGCAc -3'
miRNA:   3'- gUCGGGCCGcGG-GCCG---CGGa-------CGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 159073 0.69 0.280884
Target:  5'- gGGCCCGGCGCaaGGgGucccaccuuccccuCCUGCAGgGu -3'
miRNA:   3'- gUCGGGCCGCGggCCgC--------------GGACGUCgU- -5'
29139 5' -67.3 NC_006146.1 + 158827 0.68 0.328723
Target:  5'- aCGGCCgGG-GCCCGGC-CCUcGCAaaGCGa -3'
miRNA:   3'- -GUCGGgCCgCGGGCCGcGGA-CGU--CGU- -5'
29139 5' -67.3 NC_006146.1 + 158451 0.67 0.357386
Target:  5'- gGGCCUgaaaGGC-CCCGGCGCCUG--GCu -3'
miRNA:   3'- gUCGGG----CCGcGGGCCGCGGACguCGu -5'
29139 5' -67.3 NC_006146.1 + 157351 1.07 0.000419
Target:  5'- gCAGCCCGGCGCCCGGCGCCUGCAGCAg -3'
miRNA:   3'- -GUCGGGCCGCGGGCCGCGGACGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 156910 0.68 0.308364
Target:  5'- cCAGCCCGGCcgagGCCUGG-GUg-GCGGCGc -3'
miRNA:   3'- -GUCGGGCCG----CGGGCCgCGgaCGUCGU- -5'
29139 5' -67.3 NC_006146.1 + 156852 0.66 0.411621
Target:  5'- gCAGCcagCCGGCGCuuG-CGCCUGCccccGCc -3'
miRNA:   3'- -GUCG---GGCCGCGggCcGCGGACGu---CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.