miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29141 5' -56.7 NC_006146.1 + 168122 0.66 0.925305
Target:  5'- gCGCCugGCGUCU---UCCCUG-ACAUCc -3'
miRNA:   3'- gGCGG--CGCAGGugcAGGGACuUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 24446 0.66 0.925305
Target:  5'- gUGCUGCGcCCGCGUgUgUGGACcgCc -3'
miRNA:   3'- gGCGGCGCaGGUGCAgGgACUUGuaG- -5'
29141 5' -56.7 NC_006146.1 + 40978 0.66 0.925305
Target:  5'- aCCGCCGUGgugCCGCGccggcgcCCCaGGGCGc- -3'
miRNA:   3'- -GGCGGCGCa--GGUGCa------GGGaCUUGUag -5'
29141 5' -56.7 NC_006146.1 + 111622 0.66 0.920475
Target:  5'- aCUGCCaGCccagGUCCGCGaagacgucggccaggCCCUGAACAc- -3'
miRNA:   3'- -GGCGG-CG----CAGGUGCa--------------GGGACUUGUag -5'
29141 5' -56.7 NC_006146.1 + 96863 0.66 0.919926
Target:  5'- uCUGCCGCGUCagcCG-CCgaGAcuGCAUCc -3'
miRNA:   3'- -GGCGGCGCAGgu-GCaGGgaCU--UGUAG- -5'
29141 5' -56.7 NC_006146.1 + 85520 0.66 0.919926
Target:  5'- aCGCCG-GUCCcggcuucugGCGUCUCcaccGGGCAUCu -3'
miRNA:   3'- gGCGGCgCAGG---------UGCAGGGa---CUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 84643 0.66 0.919926
Target:  5'- gCGCCGUGcugcCCACGUgCCUGcu-GUCa -3'
miRNA:   3'- gGCGGCGCa---GGUGCAgGGACuugUAG- -5'
29141 5' -56.7 NC_006146.1 + 89294 0.66 0.91659
Target:  5'- uUCGCUGCccacauccuucucuuGUCC-CGUugcCCCUGuAGCAUCg -3'
miRNA:   3'- -GGCGGCG---------------CAGGuGCA---GGGAC-UUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 48703 0.66 0.902429
Target:  5'- cCCGCCGCuccGUCCGC-UCUCUG-GCcUCc -3'
miRNA:   3'- -GGCGGCG---CAGGUGcAGGGACuUGuAG- -5'
29141 5' -56.7 NC_006146.1 + 39889 0.66 0.900568
Target:  5'- gCCGCCuccgGCuggcuuuugagauuGUCCACGUCCaggGGACAa- -3'
miRNA:   3'- -GGCGG----CG--------------CAGGUGCAGGga-CUUGUag -5'
29141 5' -56.7 NC_006146.1 + 101703 0.67 0.894222
Target:  5'- uCCGCCcaaGcCCACGUCCCcuccguuuuaccuaUG-ACAUCa -3'
miRNA:   3'- -GGCGGcg-CaGGUGCAGGG--------------ACuUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 57158 0.67 0.892275
Target:  5'- aCCGCCGCuUCCACGccuuccucaccccagUgggccCCCUGGuggagaACAUCa -3'
miRNA:   3'- -GGCGGCGcAGGUGC---------------A-----GGGACU------UGUAG- -5'
29141 5' -56.7 NC_006146.1 + 42711 0.67 0.889649
Target:  5'- gCGCCGCGg-CGCccCCCUGGGCcgCc -3'
miRNA:   3'- gGCGGCGCagGUGcaGGGACUUGuaG- -5'
29141 5' -56.7 NC_006146.1 + 114141 0.67 0.889649
Target:  5'- cCUGCgCGUGcUCCGCGaucaggCCCcGGACGUCc -3'
miRNA:   3'- -GGCG-GCGC-AGGUGCa-----GGGaCUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 33578 0.67 0.876005
Target:  5'- gUCGCCGCGUUCGCugGUCCgguuugggUGGGCGUg -3'
miRNA:   3'- -GGCGGCGCAGGUG--CAGGg-------ACUUGUAg -5'
29141 5' -56.7 NC_006146.1 + 123057 0.67 0.876005
Target:  5'- aCGCCGgGUCCagggacGCGUCCUgcgGGGCc-- -3'
miRNA:   3'- gGCGGCgCAGG------UGCAGGGa--CUUGuag -5'
29141 5' -56.7 NC_006146.1 + 99149 0.67 0.861531
Target:  5'- -aGCCaGCGUCCAUuaGUCCCacuccaGGCGUCa -3'
miRNA:   3'- ggCGG-CGCAGGUG--CAGGGac----UUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 25387 0.67 0.861531
Target:  5'- uCCGCCGCGgcaagggCUACGucagagucUCCgUGGACAc- -3'
miRNA:   3'- -GGCGGCGCa------GGUGC--------AGGgACUUGUag -5'
29141 5' -56.7 NC_006146.1 + 44492 0.67 0.861531
Target:  5'- gUGCCGUGcUCGCGaCCCcGGGCGUCc -3'
miRNA:   3'- gGCGGCGCaGGUGCaGGGaCUUGUAG- -5'
29141 5' -56.7 NC_006146.1 + 40577 0.68 0.846267
Target:  5'- aCGCUGaugagGUCCugG-CCCUGGGCGg- -3'
miRNA:   3'- gGCGGCg----CAGGugCaGGGACUUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.